Variant report

Variant	rs7464659
Chromosome Location	chr8:119332157-119332158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10505333	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11774292	0.91[EUR][1000 genomes]
rs11779450	0.99[EUR][1000 genomes]
rs11784330	0.99[EUR][1000 genomes]
rs11784493	0.91[EUR][1000 genomes]
rs17455169	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs17681771	0.97[EUR][1000 genomes]
rs1843536	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs28365508	0.95[ASN][1000 genomes]
rs28365509	0.95[ASN][1000 genomes]
rs28365511	0.95[ASN][1000 genomes]
rs28365513	0.95[ASN][1000 genomes]
rs28365514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28365515	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs28365519	1.00[ASN][1000 genomes]
rs3894436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs55648439	0.93[EUR][1000 genomes]
rs55779460	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55826468	0.99[EUR][1000 genomes]
rs55969036	0.83[ASN][1000 genomes]
rs56067593	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56786266	0.95[ASN][1000 genomes]
rs57136694	0.83[ASN][1000 genomes]
rs57452718	0.95[ASN][1000 genomes]
rs57865924	0.99[EUR][1000 genomes]
rs57969351	0.93[ASN][1000 genomes]
rs58198250	0.83[ASN][1000 genomes]
rs58351047	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58457489	0.83[ASN][1000 genomes]
rs58533762	1.00[ASN][1000 genomes]
rs58915741	0.83[ASN][1000 genomes]
rs60224208	1.00[ASN][1000 genomes]
rs60268410	1.00[ASN][1000 genomes]
rs60421047	0.86[ASN][1000 genomes]
rs60914960	1.00[ASN][1000 genomes]
rs61113828	1.00[ASN][1000 genomes]
rs66463453	0.87[EUR][1000 genomes]
rs67252252	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68072805	0.99[EUR][1000 genomes]
rs7000702	0.87[EUR][1000 genomes]
rs7004603	0.87[EUR][1000 genomes]
rs7005199	1.00[ASN][1000 genomes]
rs7005209	0.87[EUR][1000 genomes]
rs7005310	0.87[EUR][1000 genomes]
rs7005520	0.87[EUR][1000 genomes]
rs7006241	0.87[EUR][1000 genomes]
rs7007277	1.00[ASN][1000 genomes]
rs72675874	0.98[EUR][1000 genomes]
rs72675876	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675877	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675879	0.99[EUR][1000 genomes]
rs72675881	0.99[EUR][1000 genomes]
rs73320255	1.00[ASN][1000 genomes]
rs73320264	1.00[ASN][1000 genomes]
rs73320273	1.00[ASN][1000 genomes]
rs73321948	1.00[ASN][1000 genomes]
rs73321952	1.00[ASN][1000 genomes]
rs73321972	1.00[ASN][1000 genomes]
rs7817037	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7846246	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv831442	chr8:119181675-119390122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv8382	chr8:119324224-119341066	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119323000-119357600	Weak transcription	Aorta	Aorta
2	chr8:119323000-119394000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:119323800-119362400	Weak transcription	GM12878-XiMat	blood
4	chr8:119324400-119338000	Weak transcription	Small Intestine	intestine
5	chr8:119330800-119361000	Weak transcription	Pancreas	Pancrea
6	chr8:119331600-119334200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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