Variant report

Variant	rs7465866
Chromosome Location	chr9:94896092-94896093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:82692841..82693496-chr9:94896066..94896862,2	MCF-7	breast:
2	chr9:94885307..94887334-chr9:94894826..94896515,2	MCF-7	breast:
3	chr9:94895931..94896458-chr9:95396736..95397637,2	MCF-7	breast:
4	chr1:202153463..202154431-chr9:94896000..94897129,6	MCF-7	breast:
5	chr9:94894716..94897374-chr9:94969241..94971639,2	K562	blood:
6	chr9:94895102..94897917-chr9:95001636..95003511,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10992240	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992241	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992244	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992250	0.88[ASN][1000 genomes]
rs10992251	0.81[EUR][1000 genomes]
rs1970119	0.80[ASN][1000 genomes]
rs2398673	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35121804	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35814773	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3858094	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3927571	0.81[EUR][1000 genomes]
rs4391487	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55667598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55801573	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56319302	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62564361	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62564363	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62564364	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62568696	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62568697	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748370	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv969760	chr9:94877924-94966209	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv893572	chr9:94891778-94944778	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94878200-94896400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:94894000-94896800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:94894800-94897000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr9:94895000-94900200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:94895200-94896200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:94895200-94896200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:94895800-94896200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:94895800-94896400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:94896000-94896200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:94896000-94896200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr9:94896000-94896200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr9:94896000-94896200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
13	chr9:94896000-94896200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr9:94896000-94896200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:94896000-94896200	Enhancers	Brain Angular Gyrus	brain
16	chr9:94896000-94896200	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr9:94896000-94896200	Enhancers	Brain Cingulate Gyrus	brain
18	chr9:94896000-94896200	Enhancers	Brain Substantia Nigra	brain
19	chr9:94896000-94896200	Enhancers	Colonic Mucosa	Colon
20	chr9:94896000-94896200	Bivalent Enhancer	Fetal Brain Male	brain
21	chr9:94896000-94896200	Enhancers	Fetal Kidney	kidney
22	chr9:94896000-94896200	Enhancers	Hela-S3	cervix
23	chr9:94896000-94896200	Flanking Bivalent TSS/Enh	HepG2	liver
24	chr9:94896000-94896400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr9:94896000-94896400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
26	chr9:94896000-94896400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:94896000-94896400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr9:94896000-94896400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:94896000-94896400	Bivalent Enhancer	Adipose Nuclei	Adipose
30	chr9:94896000-94896400	Enhancers	Fetal Heart	heart
31	chr9:94896000-94896400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
32	chr9:94896000-94896400	Enhancers	NHDF-Ad	bronchial
33	chr9:94896000-94896600	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr9:94896000-94896600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:94896000-94896600	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr9:94896000-94896600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:94896000-94896600	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr9:94896000-94896600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
39	chr9:94896000-94896600	Enhancers	Pancreas	Pancrea
40	chr9:94896000-94896600	Active TSS	A549	lung
41	chr9:94896000-94896600	Enhancers	Dnd41	blood
42	chr9:94896000-94896600	Enhancers	K562	blood
43	chr9:94896000-94896600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
44	chr9:94896000-94896800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:94896000-94896800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:94896000-94896800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr9:94896000-94896800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr9:94896000-94896800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:94896000-94896800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr9:94896000-94896800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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