Variant report

Variant	rs7467433
Chromosome Location	chr9:102582208-102582209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT1	chr9:102581528-102582678	GM12878	blood:	n/a	n/a
2	ESR1	chr9:102582002-102582300	T-47D	breast:	n/a	chr9:102582206-102582223 chr9:102582207-102582222
3	SRF	chr9:102581643-102582754	ECC-1	luminal epithelium:	n/a	chr9:102582184-102582194
4	POLR2A	chr9:102581686-102582304	A549	lung:	n/a	n/a
5	POLR2A	chr9:102579877-102584914	MCF10A-Er-Src	breast:	n/a	n/a
6	MAX	chr9:102581554-102582757	K562	blood:	n/a	chr9:102582184-102582194 chr9:102581879-102581888
7	CTCF	chr9:102582180-102582250	GM19239	blood:	n/a	n/a
8	CREB1	chr9:102581656-102582741	H1-hESC	embryonic stem cell:	n/a	n/a
9	HA-E2F1	chr9:102581662-102582757	Hela-S3	cervix:	n/a	chr9:102582183-102582192 chr9:102581941-102581950
10	MYC	chr9:102581681-102582614	MCF-7	breast:	n/a	chr9:102582184-102582194 chr9:102581879-102581888
11	POLR2A	chr9:102581331-102582231	HepG2	liver:	n/a	n/a
12	YY1	chr9:102581811-102582529	NT2-D1	testis:	n/a	chr9:102582059-102582073 chr9:102582183-102582192 chr9:102582377-102582388 chr9:102582180-102582189 chr9:102582180-102582191 chr9:102582181-102582195
13	BHLHE40	chr9:102581390-102582740	GM12878	blood:	n/a	n/a
14	POLR2A	chr9:102581105-102583327	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr9:102581668-102582278	HepG2	liver:	n/a	n/a
16	POLR2A	chr9:102580592-102582899	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAX	chr9:102581626-102582815	A549	lung:	n/a	chr9:102582184-102582194 chr9:102581879-102581888
18	TAF1	chr9:102581504-102582295	K562	blood:	n/a	n/a
19	E2F1	chr9:102581693-102582695	Hela-S3	cervix:	n/a	chr9:102582183-102582192 chr9:102581941-102581950
20	TAF1	chr9:102581654-102582247	A549	lung:	n/a	n/a
21	CHD2	chr9:102581648-102582723	K562	blood:	n/a	chr9:102582518-102582528
22	MAFK	chr9:102581560-102582857	Hela-S3	cervix:	n/a	n/a
23	MEF2A	chr9:102581477-102582867	GM12878	blood:	n/a	chr9:102582251-102582267 chr9:102582247-102582268 chr9:102582254-102582265 chr9:102581504-102581519 chr9:102582253-102582264 chr9:102582247-102582268 chr9:102582252-102582266 chr9:102582251-102582266 chr9:102582254-102582263
24	MAX	chr9:102581442-102582840	SK-N-SH	brain:	n/a	chr9:102582184-102582194 chr9:102581879-102581888
25	POLR2A	chr9:102581488-102585733	GM19193	blood:	n/a	n/a
26	SRF	chr9:102582075-102582525	GM12878	blood:	n/a	chr9:102582184-102582194
27	ELK4	chr9:102581722-102582329	HEK293	kidney:	n/a	n/a
28	PBX3	chr9:102581492-102582779	SK-N-SH	brain:	n/a	n/a
29	JUND	chr9:102581653-102582715	A549	lung:	n/a	chr9:102581940-102581949
30	PBX3	chr9:102582142-102582740	SK-N-SH	brain:	n/a	n/a
31	PAX5	chr9:102581446-102582299	GM12878	blood:	n/a	n/a
32	RELA	chr9:102581428-102582640	GM19193	blood:	n/a	n/a
33	POLR2A	chr9:102581405-102582261	GM12878	blood:	n/a	n/a
34	EP300	chr9:102581725-102582290	SK-N-SH_RA	brain:	n/a	n/a
35	MYC	chr9:102581533-102584579	K562	blood:	n/a	chr9:102582833-102582843 chr9:102583341-102583348 chr9:102582184-102582194 chr9:102581879-102581888
36	EGR1	chr9:102581966-102582430	H1-hESC	embryonic stem cell:	n/a	chr9:102582377-102582390 chr9:102582183-102582198 chr9:102582178-102582191 chr9:102582184-102582197 chr9:102582182-102582192 chr9:102582178-102582188 chr9:102582178-102582191 chr9:102582177-102582191 chr9:102582185-102582195 chr9:102582215-102582228 chr9:102582178-102582191 chr9:102582173-102582195 chr9:102582178-102582191 chr9:102582177-102582192 chr9:102582179-102582188 chr9:102582380-102582389
37	MAX	chr9:102581643-102582709	H1-hESC	embryonic stem cell:	n/a	chr9:102582184-102582194 chr9:102581879-102581888
38	NRF1	chr9:102581509-102584759	SK-N-SH	brain:	n/a	chr9:102582183-102582192 chr9:102581941-102581950 chr9:102583981-102583992 chr9:102582829-102582838
39	EGR1	chr9:102581719-102582450	ECC-1	luminal epithelium:	n/a	chr9:102581850-102581859 chr9:102582377-102582390 chr9:102582183-102582198 chr9:102582178-102582191 chr9:102582184-102582197 chr9:102582182-102582192 chr9:102582178-102582188 chr9:102582178-102582191 chr9:102581959-102581973 chr9:102582177-102582191 chr9:102582185-102582195 chr9:102582215-102582228 chr9:102582178-102582191 chr9:102582173-102582195 chr9:102582178-102582191 chr9:102581936-102581946 chr9:102581859-102581869 chr9:102581875-102581888 chr9:102582177-102582192 chr9:102582179-102582188 chr9:102581875-102581885 chr9:102581940-102581950 chr9:102582380-102582389
40	CTCF	chr9:102582164-102582243	GM12891	blood:	n/a	n/a
41	SIN3AK20	chr9:102581409-102582312	K562	blood:	n/a	n/a
42	SRF	chr9:102581510-102582953	HCT-116	colon:	n/a	chr9:102582184-102582194
43	YY1	chr9:102581601-102582699	HepG2	liver:	n/a	chr9:102582059-102582073 chr9:102582183-102582192 chr9:102581795-102581809 chr9:102582377-102582388 chr9:102582180-102582189 chr9:102582180-102582191 chr9:102582181-102582195
44	EP300	chr9:102581442-102582742	GM12878	blood:	n/a	chr9:102582496-102582512
45	ZNF143	chr9:102581495-102582813	GM12878	blood:	n/a	chr9:102582063-102582073
46	CEBPB	chr9:102581581-102582653	HepG2	liver:	n/a	n/a
47	JUN	chr9:102580881-102584437	K562	blood:	n/a	chr9:102584197-102584206 chr9:102581940-102581949 chr9:102584071-102584084
48	CEBPB	chr9:102581613-102582636	HepG2	liver:	n/a	n/a
49	YY1	chr9:102581934-102582439	K562	blood:	n/a	chr9:102582059-102582073 chr9:102582183-102582192 chr9:102582377-102582388 chr9:102582180-102582189 chr9:102582180-102582191 chr9:102582181-102582195
50	MAZ	chr9:102581434-102584686	K562	blood:	n/a	chr9:102582833-102582843 chr9:102583341-102583348 chr9:102582184-102582194 chr9:102581879-102581888

No.	Distal block	Cell Line	Cell type
1	chr9:102580667..102584355-chr9:102667685..102671328,3	K562	blood:
2	chr9:101984593..101986305-chr9:102581594..102583362,2	K562	blood:
3	chr9:101983020..101985403-chr9:102581774..102586122,4	MCF-7	breast:
4	chr12:50135340..50135849-chr9:102581776..102582324,2	Hela-S3	cervix:
5	chr9:102580555..102587852-chr9:102667958..102670918,11	MCF-7	breast:
6	chr5:126112741..126113341-chr9:102581665..102582333,2	Hela-S3	cervix:
7	chr9:101982726..101986093-chr9:102580219..102583469,4	K562	blood:
8	chr5:40835193..40835966-chr9:102582173..102583167,2	Hela-S3	cervix:
9	chr9:102580870..102583441-chr9:103113195..103115519,2	K562	blood:
10	chr9:102580482..102589062-chr9:102666380..102672134,16	MCF-7	breast:
11	chr9:102581880..102584384-chr9:102587876..102590490,2	MCF-7	breast:
12	chr9:102581857..102582371-chr9:140135691..140136491,2	Hela-S3	cervix:
13	chr14:67826771..67827440-chr9:102581988..102582692,2	Hela-S3	cervix:
14	chr9:102581117..102583683-chr9:103188604..103191068,4	K562	blood:
15	chr11:47788308..47788926-chr9:102581895..102582530,2	Hela-S3	cervix:
16	chr16:87425255..87426334-chr9:102581785..102582862,3	Hela-S3	cervix:
17	chr9:102581884..102583532-chr9:102728404..102730883,2	MCF-7	breast:
18	chr9:102582180..102584065-chr9:102591748..102594566,2	MCF-7	breast:
19	chr9:102581254..102583712-chr9:102860113..102863116,3	K562	blood:
20	chr9:102580574..102584384-chr9:102666062..102670667,9	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ERP44-3	chr9:102582103-102582301	XLOC_007808

Variant related genes	Relation type
ENSG00000237461	TF binding region
NR4A3	TF binding region
ENSG00000188229	Chromatin interaction
ENSG00000103264	Chromatin interaction
ENSG00000113368	Chromatin interaction
ENSG00000139644	Chromatin interaction
ENSG00000106803	Chromatin interaction
ENSG00000119508	Chromatin interaction
ENSG00000100554	Chromatin interaction
ENSG00000119509	Chromatin interaction
ENSG00000119523	Chromatin interaction
ENSG00000136874	Chromatin interaction
ENSG00000145592	Chromatin interaction
ENSG00000023318	Chromatin interaction
ENSG00000140941	Chromatin interaction
ENSG00000255145	Chromatin interaction
ENSG00000134001	Chromatin interaction
ENSG00000136891	Chromatin interaction
ENSG00000109920	Chromatin interaction
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1417738	0.81[AFR][1000 genomes]
rs7019989	0.81[AFR][1000 genomes]
rs7029504	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv528025	chr9:102540386-102613672	Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv893622	chr9:102543355-102595685	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102580800-102582600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:102580800-102583800	Active TSS	Right Atrium	heart
3	chr9:102580800-102586800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:102581000-102582600	Active TSS	Fetal Muscle Trunk	muscle
5	chr9:102581000-102583000	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr9:102581000-102583000	Active TSS	H9 Cell Line	embryonic stem cell
7	chr9:102581000-102584600	Active TSS	Small Intestine	intestine
8	chr9:102581000-102585600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:102581000-102586400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:102581200-102582400	Active TSS	H1 Cell Line	embryonic stem cell
11	chr9:102581200-102582400	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr9:102581200-102582600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:102581200-102582600	Active TSS	Thymus	Thymus
14	chr9:102581200-102583200	Active TSS	GM12878-XiMat	blood
15	chr9:102581200-102584800	Active TSS	Right Ventricle	heart
16	chr9:102581200-102585600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:102581200-102586200	Active TSS	Hela-S3	cervix
18	chr9:102581200-102587200	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:102581200-102587200	Active TSS	NHDF-Ad	bronchial
20	chr9:102581200-102587400	Active TSS	Psoas Muscle	Psoas
21	chr9:102581200-102587800	Active TSS	NHLF	lung
22	chr9:102581400-102582400	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr9:102581400-102582600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr9:102581400-102582600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:102581400-102582600	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr9:102581400-102582600	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr9:102581400-102582600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:102581400-102582600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:102581400-102582600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:102581400-102582600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:102581400-102582600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr9:102581400-102582600	Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr9:102581400-102582600	Active TSS	Rectal Mucosa Donor 29	rectum
34	chr9:102581400-102582600	Active TSS	HMEC	breast
35	chr9:102581400-102582800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:102581400-102582800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:102581400-102582800	Active TSS	Fetal Stomach	stomach
38	chr9:102581400-102582800	Active TSS	HSMM	muscle
39	chr9:102581400-102583000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr9:102581400-102583000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:102581400-102583000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:102581400-102583000	Active TSS	Fetal Kidney	kidney
43	chr9:102581400-102583200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:102581400-102583200	Active TSS	K562	blood
45	chr9:102581400-102583400	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr9:102581400-102584400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:102581400-102584600	Active TSS	Muscle Satellite Cultured Cells	--
48	chr9:102581400-102584600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:102581400-102584600	Active TSS	Placenta Amnion	Placenta Amnion
50	chr9:102581400-102584800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links