Variant report

Variant	rs7467899
Chromosome Location	chr9:95157048-95157049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10761149	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761152	0.87[EUR][1000 genomes]
rs10761156	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820952	0.86[EUR][1000 genomes]
rs1152757	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1152759	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1175788	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12552866	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2025389	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031262	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147060	0.87[EUR][1000 genomes]
rs2181712	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs230222	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2398751	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3174352	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs331380	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3780346	0.80[EUR][1000 genomes]
rs3996311	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs471478	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4743869	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4744126	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs504708	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6651532	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7867300	0.84[EUR][1000 genomes]
rs9409664	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9409667	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95139000-95163200	Weak transcription	Aorta	Aorta
2	chr9:95142000-95159400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:95142200-95165600	Weak transcription	Fetal Thymus	thymus
4	chr9:95144200-95158800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:95145000-95163800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:95148000-95164000	Weak transcription	Adipose Nuclei	Adipose
7	chr9:95148400-95158800	Weak transcription	Ovary	ovary
8	chr9:95148400-95163800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:95154600-95158800	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:95155000-95158800	Weak transcription	Fetal Stomach	stomach
11	chr9:95155600-95166600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:95156000-95157800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr9:95156000-95159200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:95156200-95168200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:95156400-95157400	Weak transcription	Fetal Lung	lung
16	chr9:95156400-95157800	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:95156400-95164200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:95156800-95164000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links