Variant report

Variant	rs7472268
Chromosome Location	chrX:65896447-65896448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chrX:65896123-65897430	SK-N-SH	brain:	n/a	n/a
2	JUND	chrX:65896088-65897453	SK-N-SH	brain:	n/a	n/a
3	EP300	chrX:65896128-65897446	SK-N-SH	brain:	n/a	chrX:65897130-65897140
4	NFIC	chrX:65896034-65897471	SK-N-SH	brain:	n/a	chrX:65896990-65897018
5	GATA3	chrX:65896065-65897446	SK-N-SH	brain:	n/a	n/a
6	TEAD4	chrX:65896130-65897407	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chrX:65896190-65898062	MCF10A-Er-Src	breast:	n/a	n/a
8	FOSL2	chrX:65896123-65897351	SK-N-SH	brain:	n/a	n/a
9	TCF12	chrX:65896004-65897489	SK-N-SH	brain:	n/a	n/a
10	FOS	chrX:65896283-65897591	MCF10A-Er-Src	breast:	n/a	n/a
11	GATA3	chrX:65896022-65897424	SK-N-SH	brain:	n/a	n/a
12	EP300	chrX:65896188-65896575	SK-N-SH_RA	brain:	n/a	n/a
13	MAX	chrX:65896284-65896723	SK-N-SH	brain:	n/a	n/a
14	NFIC	chrX:65896136-65896686	SK-N-SH	brain:	n/a	n/a
15	EP300	chrX:65896158-65896621	SK-N-SH_RA	brain:	n/a	n/a
16	PBX3	chrX:65895995-65897713	SK-N-SH	brain:	n/a	n/a
17	STAT3	chrX:65896308-65897254	MCF10A-Er-Src	breast:	n/a	chrX:65896329-65896336
18	MYC	chrX:65896261-65897241	MCF10A-Er-Src	breast:	n/a	n/a
19	CEBPB	chrX:65896305-65897200	IMR90	lung:	n/a	n/a
20	STAT3	chrX:65896249-65896469	MCF10A-Er-Src	breast:	n/a	chrX:65896329-65896336
21	FOS	chrX:65895395-65897743	MCF10A-Er-Src	breast:	n/a	chrX:65895563-65895571 chrX:65895564-65895571 chrX:65895562-65895572 chrX:65895559-65895570
22	STAT3	chrX:65896194-65896453	MCF10A-Er-Src	breast:	n/a	chrX:65896329-65896336
23	FOS	chrX:65896164-65897307	MCF10A-Er-Src	breast:	n/a	n/a
24	RAD21	chrX:65896279-65896513	SK-N-SH_RA	brain:	n/a	n/a
25	FOS	chrX:65896282-65897269	MCF10A-Er-Src	breast:	n/a	n/a
26	STAT3	chrX:65896354-65897637	MCF10A-Er-Src	breast:	n/a	n/a
27	PBX3	chrX:65896126-65897418	SK-N-SH	brain:	n/a	n/a
28	POLR2A	chrX:65896175-65896585	SK-N-SH	brain:	n/a	n/a
29	TCF12	chrX:65895989-65897491	SK-N-SH	brain:	n/a	n/a
30	EP300	chrX:65896015-65897466	SK-N-SH	brain:	n/a	chrX:65897130-65897140
31	MYC	chrX:65896218-65897210	MCF10A-Er-Src	breast:	n/a	n/a
32	STAT3	chrX:65896353-65897677	MCF10A-Er-Src	breast:	n/a	n/a
33	POLR2A	chrX:65896150-65897539	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RNU6-394P	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7052948	0.83[YRI][hapmap]
rs7056590	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	nsv916917	chrX:65628203-65966658	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv498092	chrX:65628203-66170369	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv949354	chrX:65705774-65952293	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv432334	chrX:65705774-66018207	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv520630	chrX:65706079-66017027	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv529910	chrX:65738026-66025016	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv532867	chrX:65768210-65926263	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv532866	chrX:65768210-65927478	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv532865	chrX:65768210-65952059	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv432336	chrX:65808595-65913868	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65892200-65900000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:65895400-65898000	Enhancers	HMEC	breast
3	chrX:65895800-65896600	Weak transcription	HSMM	muscle
4	chrX:65896000-65897600	Enhancers	Osteobl	bone
5	chrX:65896200-65896600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chrX:65896200-65897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chrX:65896400-65896600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chrX:65896400-65896600	Enhancers	Muscle Satellite Cultured Cells	--
9	chrX:65896400-65896600	Enhancers	NHDF-Ad	bronchial
10	chrX:65896400-65897400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chrX:65896400-65897600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chrX:65896400-65898000	Enhancers	NH-A	brain

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