Variant report

Variant	rs7476218
Chromosome Location	chr10:5356169-5356170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17134740	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs17134748	0.84[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4609510	0.90[JPT][hapmap]
rs4881432	0.98[ASN][1000 genomes]
rs7475343	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5340400-5356200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr10:5340400-5359800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:5348800-5358800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:5353800-5357400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:5355000-5357400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr10:5355000-5357400	Enhancers	Dnd41	blood
7	chr10:5355600-5356200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:5355600-5356800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:5355600-5357000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:5355600-5357400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:5355800-5356800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:5355800-5357000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:5355800-5357000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr10:5355800-5357000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr10:5355800-5357400	Enhancers	Fetal Thymus	thymus
16	chr10:5356000-5357200	Enhancers	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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