Variant report

Variant	rs7478624
Chromosome Location	chr10:45649320-45649321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:45649288-45649338	AG04450	lung:	fetal
2	chr10:45649288-45649338	Jurkat	blood:	n/a
3	chr10:45649288-45649338	HEEpiC	esophagus:	n/a
4	chr10:45649288-45649338	PANC-1	pancreas:	n/a
5	chr10:45649288-45649338	Hela-S3	cervix:	n/a
6	chr10:45649288-45649338	HRPEpiC	eye:	n/a
7	chr10:45649288-45649338	AG10803	skin:	n/a
8	chr10:45649288-45649338	NHBE	bronchial:	n/a
9	chr10:45649288-45649338	ovcar-3	ovarian:	n/a
10	chr10:45649288-45649338	AG09319	gingival:	n/a
11	chr10:45649288-45649338	HAEpiC	amniotic membrane:	n/a
12	chr10:45649288-45649338	IMR90	lung:	fetal
13	chr10:45649288-45649338	SK-N-MC	brain:	n/a
14	chr10:45649288-45649338	GM12878	blood:	n/a
15	chr10:45649288-45649338	U87	brain:	n/a
16	chr10:45649288-45649338	HCT-116	colon:	n/a
17	chr10:45649288-45649338	NT2-D1	testis:	n/a
18	chr10:45649288-45649338	HUVEC	blood vessel:	n/a
19	chr10:45649288-45649338	BE2_C	brain:	n/a
20	chr10:45649288-45649338	NH-A	brain:	n/a
21	chr10:45649288-45649338	SK-N-SH	brain:	n/a
22	chr10:45649288-45649338	NHDF-neo	bronchial:	n/a
23	chr10:45649288-45649338	SK-N-SH_RA	brain:	n/a
24	chr10:45649288-45649338	PrEC	prostate:	n/a
25	chr10:45649288-45649338	HEK293	kidney:	embryo
26	chr10:45649288-45649338	SKMC	muscle:	n/a
27	chr10:45649288-45649338	GM12892	blood:	n/a
28	chr10:45649288-45649338	RPTEC	kidney:	n/a
29	chr10:45649288-45649338	HRCEpiC	kidney:	n/a
30	chr10:45649288-45649338	AG04449	skin:	fetal
31	chr10:45649288-45649338	PFSK-1	brain:	n/a
32	chr10:45649288-45649338	Caco-2	colon:	n/a
33	chr10:45649288-45649338	AG09309	skin:	n/a
34	chr10:45649288-45649338	ProgFib	skin:	n/a
35	chr10:45649288-45649338	MCF-7	breast:	n/a
36	chr10:45649288-45649338	LNCaP	prostate:	n/a
37	chr10:45649288-45649338	HCF	heart:	n/a
38	chr10:45649288-45649338	HCPEpiC	choroid plexus:	n/a
39	chr10:45649288-45649338	ECC-1	luminal epithelium:	n/a
40	chr10:45649288-45649338	GM19239	blood:	n/a
41	chr10:45649288-45649338	A549	lung:	n/a
42	chr10:45649288-45649338	HCM	heart:	n/a
43	chr10:45649288-45649338	SAEC	small airway:	n/a
44	chr10:45649288-45649338	HRE	kidney:	n/a
45	chr10:45649288-45649338	HepG2	liver:	n/a
46	chr10:45649288-45649338	HMEC	breast:	n/a
47	chr10:45649288-45649338	T-47D	breast:	n/a
48	chr10:45649288-45649338	GM12891	blood:	n/a
49	chr10:45649288-45649338	HL-60	blood:	n/a
50	chr10:45649288-45649338	MCF10A-Er-Src	breast:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf25-2	chr10:45649288-45649414	NR_024472

No data

Variant related genes	Relation type
ANKRD54P1	CpG island
ANKRD30BP3	CpG island

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10736834	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751374	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239368	1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977765	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1988087	0.97[ASN][1000 genomes]
rs2211163	0.84[GIH][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes]
rs2311743	0.90[ASN][1000 genomes]
rs2871855	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3842994	0.95[ASN][1000 genomes]
rs3842995	0.92[ASN][1000 genomes]
rs3844164	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851259	1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851260	1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851262	0.86[TSI][hapmap]
rs3862880	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3862882	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3862883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3915591	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4256929	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4262682	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4559641	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv947903	chr10:45598715-45657182	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv895104	chr10:45636867-45715369	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7478624	ANUBL1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45647400-45650400	Enhancers	HMEC	breast
2	chr10:45647800-45650800	Weak transcription	K562	blood
3	chr10:45648600-45650000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:45648600-45650000	Weak transcription	NHEK	skin
5	chr10:45649200-45649400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links