Variant report

Variant	rs7481075
Chromosome Location	chr11:16933355-16933356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16932846..16935000-chr11:16942811..16944331,2	MCF-7	breast:
2	chr11:16931317..16933544-chr11:16934483..16936096,2	MCF-7	breast:
3	chr11:16931101..16934600-chr11:16936301..16938112,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7129155	0.97[ASN][1000 genomes]
rs7483718	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs991606	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16919800-16933600	Weak transcription	Fetal Kidney	kidney
2	chr11:16922000-16934000	Weak transcription	HepG2	liver
3	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
4	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:16927400-16934800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:16927600-16933600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:16927600-16934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:16927600-16939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:16927800-16939400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:16927800-16944400	Weak transcription	A549	lung
11	chr11:16929800-16935200	Enhancers	Stomach Mucosa	stomach
12	chr11:16930800-16934600	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:16931200-16934200	Weak transcription	Spleen	Spleen
14	chr11:16931400-16933400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:16931400-16933600	Enhancers	GM12878-XiMat	blood
16	chr11:16931400-16934000	Weak transcription	Pancreas	Pancrea
17	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
18	chr11:16931600-16934000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:16932200-16934000	Weak transcription	Fetal Intestine Large	intestine
20	chr11:16932200-16934200	Weak transcription	Left Ventricle	heart
21	chr11:16932200-16934400	Weak transcription	Right Atrium	heart
22	chr11:16932600-16933400	Enhancers	Right Ventricle	heart
23	chr11:16932600-16935400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:16932800-16933600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr11:16932800-16933800	Enhancers	Gastric	stomach
26	chr11:16932800-16934600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:16932800-16935400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr11:16933000-16933800	Weak transcription	Lung	lung
29	chr11:16933000-16934000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:16933000-16934400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:16933000-16939200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:16933200-16933400	Flanking Active TSS	Fetal Heart	heart
33	chr11:16933200-16933400	Enhancers	Small Intestine	intestine
34	chr11:16933200-16939000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links