Variant report

Variant	rs7484634
Chromosome Location	chr12:51623838-51623839
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11169781	0.81[EUR][1000 genomes]
rs1130641	0.81[EUR][1000 genomes]
rs12322924	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12424285	0.82[EUR][1000 genomes]
rs4761804	0.93[EUR][1000 genomes]
rs59298017	0.81[EUR][1000 genomes]
rs7316433	0.93[EUR][1000 genomes]
rs7316812	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51613000-51631800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:51613400-51631600	Weak transcription	Thymus	Thymus
3	chr12:51613400-51631800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr12:51613400-51631800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:51613400-51632000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:51613600-51631800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:51613600-51631800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr12:51613600-51631800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr12:51614200-51631600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr12:51616400-51631600	Weak transcription	Gastric	stomach
11	chr12:51616800-51625000	Weak transcription	Ovary	ovary
12	chr12:51616800-51631800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr12:51619400-51631800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:51619600-51631800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:51620000-51631800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:51621200-51632000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:51622800-51624000	Enhancers	Brain Germinal Matrix	brain
18	chr12:51622800-51624200	Enhancers	Fetal Brain Male	brain
19	chr12:51623800-51631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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