Variant report

Variant	rs74884664
Chromosome Location	chr3:139654298-139654299
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877544	chr3:139642572-139688415	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3486576	chr3:139652862-139656260	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3486577	chr3:139652862-139656260	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv17722	chr3:139653748-139654307	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139653200-139654800	Active TSS	Brain Anterior Caudate	brain
2	chr3:139653200-139655000	Active TSS	Brain Cingulate Gyrus	brain
3	chr3:139653200-139655200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr3:139653200-139655200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr3:139653200-139655200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr3:139653200-139655400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr3:139653200-139655600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr3:139653200-139655600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr3:139653200-139656000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr3:139653400-139654400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
11	chr3:139653400-139654400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr3:139653400-139654400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:139653400-139654400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:139653400-139654400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:139653400-139654400	Bivalent/Poised TSS	HSMM	muscle
16	chr3:139653400-139654400	Active TSS	NH-A	brain
17	chr3:139653400-139654600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:139653400-139654600	Active TSS	Fetal Brain Female	brain
19	chr3:139653400-139654600	Active TSS	Fetal Kidney	kidney
20	chr3:139653400-139654800	Active TSS	Brain Substantia Nigra	brain
21	chr3:139653400-139655000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
22	chr3:139653400-139655000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:139653400-139655000	Flanking Active TSS	Pancreas	Pancrea
24	chr3:139653400-139655000	Bivalent/Poised TSS	A549	lung
25	chr3:139653400-139655200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:139653400-139655200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:139653400-139655200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:139653400-139655400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr3:139653400-139655400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:139653400-139655600	Bivalent Enhancer	Liver	Liver
31	chr3:139653400-139656200	Active TSS	Brain Angular Gyrus	brain
32	chr3:139653400-139657000	Active TSS	HSMMtube	muscle
33	chr3:139653600-139654400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:139653600-139654400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:139653600-139654400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:139653600-139654400	Active TSS	Aorta	Aorta
37	chr3:139653600-139654400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
38	chr3:139653600-139654400	Bivalent/Poised TSS	HepG2	liver
39	chr3:139653600-139654400	Bivalent/Poised TSS	NHEK	skin
40	chr3:139653600-139654600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:139653600-139654600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
42	chr3:139653600-139654600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
43	chr3:139653600-139654800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr3:139653600-139655000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:139653600-139655000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:139653600-139655400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
47	chr3:139653600-139655600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:139653600-139655600	Active TSS	Right Atrium	heart
49	chr3:139653600-139656600	Active TSS	Ovary	ovary
50	chr3:139653800-139654400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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