Variant report

Variant	rs748851
Chromosome Location	chr15:92719105-92719106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10520704	0.88[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs1053909	0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2108601	0.88[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs28698322	0.84[ASN][1000 genomes]
rs56066897	0.83[ASN][1000 genomes]
rs62008656	0.83[ASN][1000 genomes]
rs7172018	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7181257	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs74028846	0.83[ASN][1000 genomes]
rs9744294	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs9806493	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart
3	chr15:92718400-92720400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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