Variant report

Variant	rs74885459
Chromosome Location	chr5:2038361-2038362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:2038277..2039385-chr5:2150928..2152028,5	MCF-7	breast:
2	chr5:1763417..1764044-chr5:2038313..2038983,3	MCF-7	breast:
3	chr5:2038305..2039189-chr5:4511874..4512776,3	MCF-7	breast:
4	chr5:2028233..2030258-chr5:2037202..2038966,2	MCF-7	breast:
5	chr5:1772046..1773026-chr5:2038306..2039405,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231291	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv427705	chr5:1950467-2115059	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv596900	chr5:2020274-2066165	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3420746	chr5:2037777-2040325	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3323423	chr5:2038102-2040300	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1028582	chr5:2038130-2063667	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1032941	chr5:2038130-2072872	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv301660	chr5:2038361-2038361	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:2033800-2038400	Weak transcription	Pancreas	Pancrea
2	chr5:2035200-2038400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:2037400-2038600	Weak transcription	Esophagus	oesophagus
4	chr5:2037800-2039200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:2038000-2038400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr5:2038200-2038400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:2038200-2038400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:2038200-2038400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:2038200-2038400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
10	chr5:2038200-2038400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
11	chr5:2038200-2038400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
12	chr5:2038200-2038400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:2038200-2038400	Enhancers	Adipose Nuclei	Adipose
14	chr5:2038200-2038400	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr5:2038200-2038400	Enhancers	Right Ventricle	heart
16	chr5:2038200-2038400	Bivalent Enhancer	Dnd41	blood
17	chr5:2038200-2038400	Enhancers	HMEC	breast
18	chr5:2038200-2038400	Enhancers	NHEK	skin
19	chr5:2038200-2038800	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr5:2038200-2038800	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr5:2038200-2038800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr5:2038200-2038800	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr5:2038200-2038800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr5:2038200-2039000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:2038200-2039000	Active TSS	Primary T cells from cord blood	blood
26	chr5:2038200-2039000	Bivalent/Poised TSS	Primary T helper cells PMA-I stimulated	--
27	chr5:2038200-2039000	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood

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