Variant report

Variant	rs7488685
Chromosome Location	chr12:40950205-40950206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11564145	1.00[JPT][hapmap]
rs11564146	1.00[JPT][hapmap]
rs11564164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11564165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11564229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11564231	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11564253	1.00[JPT][hapmap]
rs11564255	1.00[JPT][hapmap]
rs11564256	1.00[JPT][hapmap]
rs12422390	1.00[JPT][hapmap]
rs12423986	1.00[JPT][hapmap]
rs12424424	1.00[JPT][hapmap]
rs12425677	1.00[JPT][hapmap]
rs12425678	1.00[JPT][hapmap]
rs12426903	1.00[JPT][hapmap]
rs12427134	1.00[JPT][hapmap]
rs1365768	1.00[JPT][hapmap]
rs1365769	1.00[JPT][hapmap]
rs17128369	0.83[ASN][1000 genomes]
rs17128387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17128457	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17128472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17128481	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17128487	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17128490	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17444688	1.00[JPT][hapmap]
rs17444751	1.00[JPT][hapmap]
rs17466907	1.00[JPT][hapmap]
rs17467088	1.00[JPT][hapmap]
rs17467116	1.00[JPT][hapmap]
rs17467137	1.00[JPT][hapmap]
rs17492152	1.00[JPT][hapmap]
rs17497443	0.83[ASN][1000 genomes]
rs1844978	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1918944	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1918945	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1965310	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2017917	1.00[JPT][hapmap]
rs34736038	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3899331	1.00[JPT][hapmap]
rs3899332	1.00[JPT][hapmap]
rs4768248	1.00[JPT][hapmap]
rs4768249	1.00[JPT][hapmap]
rs4768253	1.00[JPT][hapmap]
rs4768254	1.00[JPT][hapmap]
rs4768264	0.83[ASN][1000 genomes]
rs4768286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7485401	1.00[JPT][hapmap]
rs7487209	1.00[JPT][hapmap]
rs7487333	1.00[JPT][hapmap]
rs7489023	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv8970	chr12:40904094-40951213	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40947400-40967800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:40949600-40951800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links