Variant report

Variant	rs74896797
Chromosome Location	chr10:49916677-49916678
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv512162	chr10:49915860-49919375	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3361529	chr10:49916471-49918494	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv2472494	chr10:49916628-49918127	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
4	chr10:49910800-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:49914200-49922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:49914800-49917000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:49915200-49916800	Enhancers	Aorta	Aorta
11	chr10:49915200-49916800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:49915200-49917200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:49915400-49916800	Enhancers	Right Atrium	heart
14	chr10:49915400-49918800	Enhancers	Fetal Muscle Leg	muscle
15	chr10:49915400-49921600	Strong transcription	GM12878-XiMat	blood
16	chr10:49915600-49916800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:49915600-49916800	Enhancers	HSMMtube	muscle
18	chr10:49915800-49917000	Enhancers	Brain Hippocampus Middle	brain
19	chr10:49915800-49917000	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:49916200-49916800	Enhancers	Placenta	Placenta
21	chr10:49916400-49916800	Flanking Active TSS	Fetal Heart	heart
22	chr10:49916400-49916800	Enhancers	Fetal Stomach	stomach
23	chr10:49916400-49918800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:49916600-49916800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
25	chr10:49916600-49916800	Enhancers	Left Ventricle	heart
26	chr10:49916600-49916800	Enhancers	Right Ventricle	heart
27	chr10:49916600-49916800	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
28	chr10:49916600-49917000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr10:49916600-49917400	Weak transcription	Fetal Lung	lung
30	chr10:49916600-49917800	Weak transcription	Primary B cells from cord blood	blood
31	chr10:49916600-49917800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links