Variant report

Variant	rs7490383
Chromosome Location	chr13:38347817-38347818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1319667	0.81[AMR][1000 genomes]
rs1333370	0.81[AMR][1000 genomes]
rs1333371	0.81[AMR][1000 genomes]
rs1333373	0.81[AMR][1000 genomes]
rs1831799	0.81[AMR][1000 genomes]
rs1855253	0.81[AMR][1000 genomes]
rs2875103	0.81[AMR][1000 genomes]
rs7139739	0.81[AMR][1000 genomes]
rs7321594	0.81[AMR][1000 genomes]
rs7327448	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7330192	0.81[AMR][1000 genomes]
rs7330208	0.81[AMR][1000 genomes]
rs7335814	0.81[AMR][1000 genomes]
rs7339215	0.80[AMR][1000 genomes]
rs933006	0.81[AMR][1000 genomes]
rs9594230	0.80[AMR][1000 genomes]
rs9603257	0.81[AMR][1000 genomes]
rs9603258	0.81[AMR][1000 genomes]
rs989060	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753974	chr13:38341331-38363450	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38341000-38349800	Weak transcription	Osteobl	bone
2	chr13:38342800-38349800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links