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Variant report
Variant
rs7490473
Chromosome Location
chr13:39511125-39511126
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 7 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:6)
rs_ID
r
2
[population]
rs4350465
1.00[CEU][hapmap]
rs58320039
0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7139666
0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73467952
0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9576636
1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9576637
0.88[EUR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv2754118
chr13:39347702-40222644
Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
22 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links