Variant report

Variant	rs74921040
Chromosome Location	chr6:36807633-36807634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36803997..36809047-chr6:36852852..36856509,4	K562	blood:
2	chr6:36807524..36809361-chr6:36841077..36843091,2	K562	blood:
3	chr6:36807086..36809328-chr6:36841078..36843476,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CPNE5-1	chr6:36807550-36808916	XLOC_005701

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv3421891	chr6:36806599-36809147	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36804000-36808200	Active TSS	Brain Anterior Caudate	brain
2	chr6:36806000-36808000	Active TSS	Left Ventricle	heart
3	chr6:36806200-36808200	Active TSS	Brain Angular Gyrus	brain
4	chr6:36806200-36808400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:36806600-36808000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
6	chr6:36806600-36808200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:36806600-36808200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
8	chr6:36806600-36808400	Bivalent/Poised TSS	Fetal Kidney	kidney
9	chr6:36806600-36809000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:36806600-36809000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr6:36806600-36809000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:36806600-36809000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:36806600-36809000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:36806600-36809000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:36806800-36807800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:36806800-36808000	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:36806800-36808000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:36806800-36808400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:36806800-36808400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
20	chr6:36806800-36808400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr6:36806800-36808600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr6:36806800-36808800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:36806800-36809000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:36807000-36807800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:36807000-36808000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:36807000-36808000	Active TSS	Brain Substantia Nigra	brain
27	chr6:36807000-36808000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:36807000-36808200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
29	chr6:36807000-36808400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr6:36807000-36808600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
31	chr6:36807000-36808600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:36807000-36808600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
33	chr6:36807000-36808800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:36807000-36808800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
35	chr6:36807200-36807800	Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr6:36807200-36807800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:36807200-36807800	Active TSS	HSMM	muscle
38	chr6:36807200-36807800	Bivalent/Poised TSS	Osteobl	bone
39	chr6:36807200-36808000	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:36807200-36808000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:36807200-36808000	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr6:36807200-36808000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:36807200-36808000	Active TSS	Muscle Satellite Cultured Cells	--
44	chr6:36807200-36808000	Enhancers	Liver	Liver
45	chr6:36807200-36808000	Active TSS	Brain Cingulate Gyrus	brain
46	chr6:36807200-36808000	Bivalent/Poised TSS	Placenta Amnion	Placenta Amnion
47	chr6:36807200-36808000	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr6:36807200-36808000	Active TSS	A549	lung
49	chr6:36807200-36808000	Active TSS	HUVEC	blood vessel
50	chr6:36807200-36808000	Bivalent/Poised TSS	NHEK	skin

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