Variant report

Variant	rs7495848
Chromosome Location	chr15:74010568-74010569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73996776..73999738-chr15:74010371..74012368,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1871229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58316634	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59067146	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7174764	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
2	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
3	chr15:74003200-74015400	Weak transcription	Fetal Kidney	kidney
4	chr15:74004000-74015400	Weak transcription	Fetal Lung	lung
5	chr15:74004200-74011800	Weak transcription	Brain Substantia Nigra	brain
6	chr15:74005800-74010800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:74006000-74011400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:74006200-74011600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:74006200-74015800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:74006400-74012400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:74006600-74011800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:74006600-74012600	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:74006600-74015000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74006600-74015000	Weak transcription	Brain Anterior Caudate	brain
15	chr15:74006600-74015600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:74006600-74016600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:74006600-74016600	Weak transcription	Gastric	stomach
18	chr15:74006600-74016600	Weak transcription	Spleen	Spleen
19	chr15:74006800-74012200	Weak transcription	Right Ventricle	heart
20	chr15:74007000-74010600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:74007200-74010600	Weak transcription	Fetal Intestine Large	intestine
22	chr15:74007200-74010800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:74007200-74011000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:74007200-74011200	Weak transcription	Brain Germinal Matrix	brain
25	chr15:74007200-74016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:74007400-74010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:74007400-74011000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:74007400-74011200	Enhancers	Fetal Heart	heart
29	chr15:74007400-74011400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:74007400-74012200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr15:74007400-74015200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:74007400-74031400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:74007600-74015800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:74007800-74012400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:74009400-74010600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:74009400-74016600	Weak transcription	Lung	lung
37	chr15:74009400-74018400	Weak transcription	Left Ventricle	heart
38	chr15:74010000-74011000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:74010200-74010600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr15:74010400-74010800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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