Variant report

Variant	rs7496834
Chromosome Location	chr15:72903605-72903606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:72903586-72903880	K562	blood:	n/a	n/a
2	CTCF	chr15:72903507-72903899	A549	lung:	n/a	n/a
3	RXRA	chr15:72903366-72903744	HepG2	liver:	n/a	n/a
4	RXRA	chr15:72903554-72903749	HepG2	liver:	n/a	n/a
5	CTCF	chr15:72903454-72903981	K562	blood:	n/a	n/a
6	EBF1	chr15:72903513-72903830	GM12878	blood:	n/a	n/a
7	PAX5	chr15:72903570-72903882	GM12878	blood:	n/a	n/a
8	EBF1	chr15:72903554-72903830	GM12878	blood:	n/a	n/a
9	FOSL2	chr15:72903290-72903890	HepG2	liver:	n/a	n/a
10	CTCF	chr15:72903518-72903982	A549	lung:	n/a	n/a
11	POLR2A	chr15:72903498-72903958	H1-hESC	embryonic stem cell:	n/a	n/a
12	TCF12	chr15:72903589-72903836	GM12878	blood:	n/a	n/a
13	JUND	chr15:72903573-72903868	HepG2	liver:	n/a	n/a
14	PAX5	chr15:72903553-72903817	GM12878	blood:	n/a	n/a
15	USF1	chr15:72903562-72903892	HepG2	liver:	n/a	n/a
16	POU2F2	chr15:72903570-72903907	GM12878	blood:	n/a	n/a
17	CTCF	chr15:72903513-72903839	A549	lung:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72902749..72904862-chr15:72907077..72909807,2	K562	blood:

No data

Variant related genes	Relation type
RN7SL485P	TF binding region
ENSG00000260672	TF binding region
ENSG00000260672	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34054264	1.00[AMR][1000 genomes]
rs61669211	1.00[AMR][1000 genomes]
rs71397259	1.00[AMR][1000 genomes]
rs71397261	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv977732	chr15:72897457-72963802	Genic enhancers Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3510859	chr15:72898800-72949834	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3510860	chr15:72898800-72949834	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:72876200-72907800	Weak transcription	Brain Substantia Nigra	brain
3	chr15:72876400-72903800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:72876800-72907600	Weak transcription	Lung	lung
5	chr15:72877800-72910000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:72878400-72907800	Weak transcription	Left Ventricle	heart
7	chr15:72879800-72906400	Weak transcription	Adipose Nuclei	Adipose
8	chr15:72883200-72909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:72888000-72908200	Weak transcription	Right Ventricle	heart
10	chr15:72894600-72909000	Weak transcription	HSMMtube	muscle
11	chr15:72894800-72903800	Weak transcription	Fetal Intestine Small	intestine
12	chr15:72895200-72906000	Weak transcription	Fetal Brain Female	brain
13	chr15:72898400-72906200	Weak transcription	Spleen	Spleen
14	chr15:72898400-72910600	Weak transcription	Esophagus	oesophagus
15	chr15:72899200-72907600	Weak transcription	Right Atrium	heart
16	chr15:72899800-72905600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:72899800-72908000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:72900400-72908400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:72902200-72907800	Weak transcription	Pancreas	Pancrea
20	chr15:72902600-72908400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:72902800-72907000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links