Variant report

Variant	rs7497362
Chromosome Location	chr15:74043523-74043524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11858458	0.87[ASN][1000 genomes]
rs74023531	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74035600-74043800	Weak transcription	Esophagus	oesophagus
2	chr15:74039800-74043600	Weak transcription	Adipose Nuclei	Adipose
3	chr15:74041400-74043800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74041400-74044000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:74041800-74043600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74042200-74043800	Enhancers	Right Atrium	heart
7	chr15:74042400-74043600	Enhancers	Left Ventricle	heart
8	chr15:74042800-74043600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:74042800-74043600	Enhancers	Right Ventricle	heart
10	chr15:74042800-74044000	Flanking Active TSS	Fetal Brain Female	brain
11	chr15:74043000-74043600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:74043000-74043600	Enhancers	Brain Cingulate Gyrus	brain
13	chr15:74043000-74043800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:74043000-74043800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr15:74043000-74044000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:74043000-74044000	Flanking Active TSS	Brain Angular Gyrus	brain
17	chr15:74043200-74043600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
18	chr15:74043200-74043600	Weak transcription	Fetal Kidney	kidney
19	chr15:74043200-74043600	Bivalent Enhancer	Fetal Stomach	stomach
20	chr15:74043200-74043800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
21	chr15:74043200-74043800	Enhancers	Ovary	ovary
22	chr15:74043200-74044000	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:74043200-74044000	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr15:74043200-74044000	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr15:74043200-74044400	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr15:74043200-74046000	Active TSS	H9 Cell Line	embryonic stem cell
27	chr15:74043400-74043800	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr15:74043400-74043800	Enhancers	Fetal Brain Male	brain
29	chr15:74043400-74044000	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr15:74043400-74044200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr15:74043400-74044200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:74043400-74044200	Bivalent Enhancer	Lung	lung
33	chr15:74043400-74044200	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr15:74043400-74044400	Bivalent Enhancer	Placenta	Placenta
35	chr15:74043400-74044800	Bivalent/Poised TSS	Fetal Lung	lung
36	chr15:74043400-74045000	Enhancers	Spleen	Spleen
37	chr15:74043400-74045400	Active TSS	Brain Substantia Nigra	brain

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