Variant report

Variant	rs7501462
Chromosome Location	chr17:16877405-16877406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:63)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:63 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD1	chr17:16877063-16877712	GM12878	blood:	n/a	n/a
2	NFIC	chr17:16876805-16877693	GM12878	blood:	n/a	chr17:16877559-16877587
3	TAF1	chr17:16877057-16877425	GM12878	blood:	n/a	n/a
4	NFATC1	chr17:16876971-16877450	GM12878	blood:	n/a	n/a
5	EP300	chr17:16877004-16877737	GM12878	blood:	n/a	n/a
6	STAT3	chr17:16877043-16877545	GM12878	blood:	n/a	n/a
7	POU2F2	chr17:16877022-16877436	GM12878	blood:	n/a	n/a
8	TBP	chr17:16877020-16877626	GM12878	blood:	n/a	n/a
9	BHLHE40	chr17:16877045-16877692	GM12878	blood:	n/a	n/a
10	ATF2	chr17:16876944-16877454	GM12878	blood:	n/a	n/a
11	CREB1	chr17:16876972-16877574	GM12878	blood:	n/a	n/a
12	MAZ	chr17:16877081-16877747	GM12878	blood:	n/a	n/a
13	EP300	chr17:16877052-16877493	GM12878	blood:	n/a	n/a
14	PAX5	chr17:16877042-16877420	GM12878	blood:	n/a	n/a
15	POLR2A	chr17:16876287-16877758	GM12878	blood:	n/a	n/a
16	EBF1	chr17:16877083-16877411	GM12878	blood:	n/a	n/a
17	RUNX3	chr17:16876942-16877817	GM12878	blood:	n/a	n/a
18	WRNIP1	chr17:16877086-16877612	GM12878	blood:	n/a	n/a
19	ATF2	chr17:16876862-16877750	GM12878	blood:	n/a	n/a
20	FOXM1	chr17:16876829-16877568	GM12878	blood:	n/a	n/a
21	POLR2A	chr17:16876971-16877432	GM12892	blood:	n/a	n/a
22	MEF2A	chr17:16877045-16877552	GM12878	blood:	n/a	n/a
23	NFIC	chr17:16876943-16877586	GM12878	blood:	n/a	n/a
24	EP300	chr17:16877012-16877435	GM12878	blood:	n/a	n/a
25	IRF3	chr17:16877227-16877564	GM12878	blood:	n/a	n/a
26	CEBPB	chr17:16876858-16877585	GM12878	blood:	n/a	n/a
27	SP1	chr17:16876997-16877445	GM12878	blood:	n/a	n/a
28	SIN3A	chr17:16877084-16877416	GM12878	blood:	n/a	n/a
29	RAD21	chr17:16877092-16877417	GM12878	blood:	n/a	n/a
30	RELA	chr17:16877003-16877722	GM19099	blood:	n/a	n/a
31	SP1	chr17:16877032-16877411	GM12878	blood:	n/a	n/a
32	ELK1	chr17:16877112-16877410	GM12878	blood:	n/a	n/a
33	CUX1	chr17:16877026-16877529	GM12878	blood:	n/a	n/a
34	FOXM1	chr17:16876900-16877499	GM12878	blood:	n/a	n/a
35	POU2F2	chr17:16876883-16877491	GM12878	blood:	n/a	n/a
36	CEBPB	chr17:16877278-16877454	HepG2	liver:	n/a	n/a
37	BCL3	chr17:16876979-16877445	GM12878	blood:	n/a	n/a
38	IRF4	chr17:16876951-16877410	GM12878	blood:	n/a	n/a
39	USF2	chr17:16877103-16877543	GM12878	blood:	n/a	n/a
40	BCLAF1	chr17:16876897-16877757	GM12878	blood:	n/a	n/a
41	TBL1XR1	chr17:16877002-16877711	GM12878	blood:	n/a	n/a
42	YY1	chr17:16877055-16877410	GM12878	blood:	n/a	n/a
43	MTA3	chr17:16876835-16877904	GM12878	blood:	n/a	n/a
44	MAX	chr17:16876974-16877721	GM12878	blood:	n/a	n/a
45	SMC3	chr17:16877090-16877442	GM12878	blood:	n/a	n/a
46	MTA3	chr17:16876927-16877790	GM12878	blood:	n/a	n/a
47	RCOR1	chr17:16877032-16877443	GM12878	blood:	n/a	n/a
48	PML	chr17:16876900-16877634	GM12878	blood:	n/a	n/a
49	STAT5A	chr17:16876859-16877500	GM12878	blood:	n/a	n/a
50	PAX5	chr17:16876948-16877557	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
TNFRSF13B	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11078362	0.93[ASN][1000 genomes]
rs12601542	0.93[ASN][1000 genomes]
rs35196703	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35898095	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4985758	0.97[ASN][1000 genomes]
rs6502546	0.97[ASN][1000 genomes]
rs7212800	0.80[ASN][1000 genomes]
rs7503544	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2761948	chr17:16868561-16920568	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16867400-16883800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:16873000-16880800	Enhancers	Fetal Thymus	thymus
3	chr17:16874200-16880000	Enhancers	Dnd41	blood
4	chr17:16875200-16885800	Enhancers	Primary B cells from cord blood	blood
5	chr17:16875400-16878000	Weak transcription	Spleen	Spleen
6	chr17:16875400-16878400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:16875600-16877600	Flanking Active TSS	GM12878-XiMat	blood
8	chr17:16875600-16878600	Weak transcription	Thymus	Thymus
9	chr17:16875800-16887200	Enhancers	Primary B cells from peripheral blood	blood
10	chr17:16877400-16877600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr17:16877400-16878400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:16877400-16878400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr17:16877400-16879600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links