Variant report

Variant	rs7506616
Chromosome Location	chr18:45034793-45034794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12607893	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2036798	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4939854	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4939862	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6507775	0.83[JPT][hapmap]
rs8095913	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9304350	0.85[CHB][hapmap]
rs9635948	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9964683	0.93[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7506616	LIPG	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45033800-45035400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr18:45034000-45035000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr18:45034000-45036400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:45034200-45035000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr18:45034200-45035000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:45034200-45035200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:45034400-45035000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:45034400-45035400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr18:45034600-45035000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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