Variant report

Variant	rs7510551
Chromosome Location	chr21:15912067-15912068
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15910273..15912719-chr21:15913712..15915287,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10854319	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11702574	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11909106	0.84[ASN][1000 genomes]
rs12329657	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1882916	0.83[ASN][1000 genomes]
rs1980955	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1985538	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2178933	0.91[EUR][1000 genomes]
rs2178934	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2223092	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2822760	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2822761	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2822762	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2822763	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2822765	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2822767	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3810580	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4817247	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4817248	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6516875	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6516876	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7275507	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7280293	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8132641	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9980395	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9980490	0.85[ASN][1000 genomes]
rs9981275	0.84[ASN][1000 genomes]
rs9983245	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1058533	chr21:15896056-15948474	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv544377	chr21:15896056-15948474	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv2763685	chr21:15904945-15933282	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv587048	chr21:15908642-15932610	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv522627	chr21:15908642-15936503	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15904600-15913600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:15906800-15914000	Weak transcription	Fetal Thymus	thymus
3	chr21:15907000-15914000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr21:15907200-15914000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr21:15908000-15913600	Weak transcription	Primary T cells from cord blood	blood
6	chr21:15908000-15914000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr21:15908200-15913800	Weak transcription	Primary B cells from cord blood	blood
8	chr21:15908200-15913800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr21:15909000-15912800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr21:15909400-15912800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr21:15909600-15913600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr21:15910400-15913600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr21:15910400-15913600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr21:15911200-15913600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr21:15911200-15913600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr21:15911400-15913400	Weak transcription	Dnd41	blood
17	chr21:15911400-15913600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr21:15911600-15913400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr21:15911600-15913600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr21:15911600-15913600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr21:15911600-15913600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr21:15911600-15913600	Weak transcription	GM12878-XiMat	blood
23	chr21:15911600-15913600	Weak transcription	K562	blood
24	chr21:15911600-15913600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr21:15911600-15913800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr21:15911800-15913200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr21:15911800-15913600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr21:15912000-15912600	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links