Variant report

Variant	rs7512638
Chromosome Location	chr1:179486685-179486686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179477575..179481033-chr1:179483963..179487085,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10494517	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10494518	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11581470	0.87[CEU][hapmap]
rs11584680	0.88[EUR][1000 genomes]
rs11585517	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11586725	0.88[YRI][hapmap]
rs11808258	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12566954	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13306732	0.84[CEU][hapmap]
rs1410585	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs16854042	0.87[CEU][hapmap]
rs16854244	0.98[EUR][1000 genomes]
rs2209922	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs2274622	0.87[YRI][hapmap];0.83[ASN][1000 genomes]
rs2296960	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs3765547	0.85[YRI][hapmap]
rs4072451	0.88[CEU][hapmap]
rs4072452	0.88[CEU][hapmap]
rs4111171	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs41267596	0.95[EUR][1000 genomes]
rs4651041	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4651042	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4652380	0.84[CEU][hapmap]
rs4652400	0.88[EUR][1000 genomes]
rs4652406	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4652407	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4652408	0.99[EUR][1000 genomes]
rs4652411	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4652412	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs55908143	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs56071531	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs56237305	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57340322	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6425557	0.87[CEU][hapmap]
rs6425571	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6425572	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6425574	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6657452	0.89[EUR][1000 genomes]
rs6658180	0.97[EUR][1000 genomes]
rs6666455	0.87[CEU][hapmap]
rs6668120	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6674086	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6700149	0.84[CEU][hapmap]
rs72704417	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72704467	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72704477	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7413415	0.88[CEU][hapmap]
rs7520806	0.80[CEU][hapmap]
rs7529107	0.89[EUR][1000 genomes]
rs7541890	0.88[YRI][hapmap]
rs7543334	0.95[ASN][1000 genomes]
rs7548654	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7551610	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs962428	0.89[EUR][1000 genomes]
rs964983	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs964984	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7512638	TDRD5	cis	Artery Aorta	GTEx
rs7512638	TDRD5	cis	Nerve Tibial	GTEx
rs7512638	TDRD5	cis	Thyroid	GTEx
rs7512638	RP11-545A16.3	cis	Artery Aorta	GTEx
rs7512638	TDRD5	cis	Adipose Subcutaneous	GTEx
rs7512638	TDRD5	cis	Esophagus Mucosa	GTEx
rs7512638	TDRD5	cis	Artery Tibial	GTEx
rs7512638	TDRD5	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179485400-179486800	Enhancers	Stomach Mucosa	stomach
2	chr1:179485800-179486800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:179486400-179487000	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr1:179486400-179487200	Active TSS	Colonic Mucosa	Colon
5	chr1:179486400-179487200	Active TSS	Rectal Mucosa Donor 31	rectum
6	chr1:179486400-179499600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:179486600-179486800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:179486600-179487400	Active TSS	Duodenum Mucosa	Duodenum
9	chr1:179486600-179499600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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