Variant report

Variant	rs7512666
Chromosome Location	chr1:211658150-211658151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211653426..211655155-chr1:211655714..211658507,2	K562	blood:
2	chr1:211649424..211652374-chr1:211654893..211658184,3	K562	blood:
3	chr1:211643117..211644840-chr1:211656331..211659114,2	K562	blood:
4	chr1:211656956..211658686-chr1:211707478..211709972,2	K562	blood:
5	chr1:211656405..211659421-chr1:211661740..211666279,5	K562	blood:
6	chr1:211656913..211659183-chr1:211661740..211664664,3	K562	blood:
7	chr1:211656368..211658461-chr1:211818304..211819839,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10863898	0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs11119745	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11119746	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11119747	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11119749	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11119751	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs11809922	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12040334	0.90[YRI][hapmap];0.92[AFR][1000 genomes]
rs12041942	0.85[YRI][hapmap]
rs12076715	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12078629	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1361031	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1947058	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2184856	0.91[ASN][1000 genomes]
rs60545899	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527404	0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs7534285	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs755448	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211647800-211664600	Weak transcription	Gastric	stomach
2	chr1:211648000-211665600	Weak transcription	Right Atrium	heart
3	chr1:211655800-211659400	Enhancers	Fetal Muscle Leg	muscle
4	chr1:211656000-211659000	Enhancers	HSMMtube	muscle
5	chr1:211656200-211658200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:211657000-211663000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:211657200-211658600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr1:211657400-211658800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:211657600-211658400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:211657600-211663800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:211658000-211659200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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