The 2.0 version of rSNPBase

Variant report

Variant rs75139597
Chromosome Location chr3:56830672-56830673
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:56807000-56833200 Weak transcription Placenta Amnion Placenta Amnion
2 chr3:56818600-56832000 Weak transcription Rectal Smooth Muscle rectum
3 chr3:56819200-56834400 Weak transcription Fetal Muscle Trunk muscle
4 chr3:56820600-56834600 Weak transcription NHDF-Ad bronchial
5 chr3:56822400-56833200 Weak transcription Fetal Stomach stomach
6 chr3:56822800-56833200 Weak transcription Duodenum Mucosa Duodenum
7 chr3:56823400-56833200 Weak transcription Fetal Muscle Leg muscle
8 chr3:56825000-56831800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr3:56825200-56832000 Weak transcription Brain Substantia Nigra brain
10 chr3:56825400-56831800 Weak transcription NHEK skin
11 chr3:56825600-56832400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr3:56826400-56833200 Weak transcription Stomach Smooth Muscle stomach
13 chr3:56826600-56831000 Weak transcription Spleen Spleen
14 chr3:56826600-56831800 Weak transcription Psoas Muscle Psoas
15 chr3:56826800-56830800 Weak transcription Brain Anterior Caudate brain
16 chr3:56827400-56834400 Weak transcription Muscle Satellite Cultured Cells --
17 chr3:56827600-56831200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr3:56827800-56831200 Enhancers Pancreas Pancrea
19 chr3:56828000-56831000 Enhancers Primary monocytes fromperipheralblood blood
20 chr3:56828200-56832400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr3:56828600-56831400 Enhancers Breast Myoepithelial Primary Cells Breast
22 chr3:56829000-56830800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr3:56829000-56830800 Enhancers Adipose Nuclei Adipose
24 chr3:56829000-56831000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr3:56829000-56831000 Enhancers Fetal Lung lung
26 chr3:56829000-56831000 Enhancers Sigmoid Colon Sigmoid Colon
27 chr3:56829000-56831200 Enhancers Primary hematopoietic stem cells short term culture blood
28 chr3:56829000-56831200 Enhancers Placenta Placenta
29 chr3:56829000-56831200 Enhancers Left Ventricle heart
30 chr3:56829000-56832000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr3:56829000-56832400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr3:56829000-56832400 Enhancers Colon Smooth Muscle Colon
33 chr3:56829000-56832400 Genic enhancers Fetal Thymus thymus
34 chr3:56829000-56832600 Enhancers HepG2 liver
35 chr3:56829000-56833200 Enhancers Fetal Adrenal Gland Adrenal Gland
36 chr3:56829000-56833200 Enhancers Stomach Mucosa stomach
37 chr3:56829200-56830800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr3:56829200-56830800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
39 chr3:56829200-56830800 Enhancers HSMMtube muscle
40 chr3:56829200-56831200 Enhancers Osteobl bone
41 chr3:56829200-56831600 Genic enhancers Primary T cells from cord blood blood
42 chr3:56829200-56831800 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
43 chr3:56829400-56832000 Enhancers Primary T helper naive cells fromperipheralblood blood
44 chr3:56829400-56832000 Enhancers Pancreatic Islets Pancreatic Islet
45 chr3:56829400-56832400 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr3:56829400-56833000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
47 chr3:56829400-56833200 Weak transcription Hela-S3 cervix
48 chr3:56829600-56830800 Enhancers Primary B cells from peripheral blood blood
49 chr3:56829600-56830800 Weak transcription Brain Germinal Matrix brain
50 chr3:56829600-56831000 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015