Variant report

Variant	rs7515302
Chromosome Location	chr1:160485452-160485453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10797073	0.88[ASN][1000 genomes]
rs12144628	0.91[ASN][1000 genomes]
rs2025516	0.83[ASN][1000 genomes]
rs2025517	0.83[ASN][1000 genomes]
rs2099604	0.91[ASN][1000 genomes]
rs4106115	0.96[ASN][1000 genomes]
rs6656191	0.93[ASN][1000 genomes]
rs6660233	0.95[ASN][1000 genomes]
rs7528976	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7515302	CD84	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160473800-160485800	Weak transcription	Thymus	Thymus
2	chr1:160482200-160489200	Weak transcription	Fetal Thymus	thymus
3	chr1:160482400-160485600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:160482600-160489200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:160482800-160488800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:160483600-160489000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:160484000-160489200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:160484800-160485800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:160484800-160489000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:160484800-160489200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:160484800-160489200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:160485000-160489200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:160485200-160485800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:160485200-160486200	Enhancers	Primary T cells from cord blood	blood
15	chr1:160485200-160487000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr1:160485400-160486000	Weak transcription	Primary B cells from cord blood	blood
17	chr1:160485400-160486000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:160485400-160486400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr1:160485400-160486800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:160485400-160487200	Enhancers	Primary B cells from peripheral blood	blood

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