Variant report

Variant	rs7515482
Chromosome Location	chr1:174890454-174890455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174887340..174889022-chr1:174889094..174890762,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6657786	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6674330	1.00[AFR][1000 genomes]
rs6678823	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6691857	1.00[YRI][hapmap]
rs6700816	1.00[YRI][hapmap]
rs7540198	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7554867	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174861400-174902400	Weak transcription	Left Ventricle	heart
2	chr1:174872800-174900400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:174873400-174897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:174874000-174910000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:174874200-174938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:174876800-174933600	Weak transcription	Aorta	Aorta
7	chr1:174883600-174900600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:174885400-174892600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:174886000-174891400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:174886000-174897000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:174886000-174907200	Weak transcription	Primary T cells from cord blood	blood
12	chr1:174886400-174891200	Weak transcription	Gastric	stomach
13	chr1:174886400-174896600	Weak transcription	Pancreas	Pancrea
14	chr1:174886400-174911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:174888800-174891400	Weak transcription	Colonic Mucosa	Colon
16	chr1:174888800-174897000	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:174889200-174897200	Weak transcription	Fetal Intestine Large	intestine
18	chr1:174889600-174897200	Weak transcription	Fetal Intestine Small	intestine
19	chr1:174889600-174907400	Weak transcription	Primary B cells from cord blood	blood
20	chr1:174889800-174896600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:174889800-174900000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:174890000-174890800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:174890000-174891200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:174890000-174892200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:174890000-174899600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr1:174890000-174900600	Weak transcription	Rectal Mucosa Donor 31	rectum

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