Variant report

Variant	rs7515898
Chromosome Location	chr1:76871716-76871717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76871350..76874295-chr1:76994896..76997570,2	K562	blood:
2	chr1:76870428..76873153-chr1:76875050..76877438,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10218698	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10747346	0.82[CHB][hapmap]
rs10747347	0.86[CHB][hapmap]
rs11162135	0.83[CHB][hapmap]
rs11162144	0.81[CHB][hapmap]
rs11162148	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12029184	0.83[CHB][hapmap]
rs12032409	0.81[CHB][hapmap]
rs12033631	0.98[ASN][1000 genomes]
rs12035993	0.83[CHB][hapmap]
rs12046895	0.82[CHB][hapmap]
rs1325291	0.83[CHB][hapmap]
rs1359467	0.81[CHB][hapmap]
rs1359471	0.83[CHB][hapmap]
rs1408866	0.83[CHB][hapmap]
rs2031482	0.83[CHB][hapmap]
rs4459158	0.85[CHB][hapmap]
rs6666049	0.83[CHB][hapmap]
rs72678035	0.94[ASN][1000 genomes]
rs7339997	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014231	chr1:76781140-76880630	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv462006	chr1:76826279-77042405	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv546585	chr1:76826279-77042405	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76871000-76872000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:76871600-76871800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:76871600-76872000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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