Variant report

Variant	rs75177863
Chromosome Location	chr15:42546098-42546099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42545753..42549905-chr15:42563424..42566580,4	K562	blood:
2	chr15:42533593..42536142-chr15:42545624..42547945,2	K562	blood:
3	chr15:42544904..42547005-chr15:42561537..42563318,2	K562	blood:
4	chr15:42544015..42546634-chr15:42547457..42549970,2	K562	blood:

Variant related genes	Relation type
ENSG00000214013	Chromatin interaction
ENSG00000103978	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv1807328	chr15:42525300-42573278	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	esv1006302	chr15:42545749-42552598	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42500800-42563200	Weak transcription	Stomach Mucosa	stomach
2	chr15:42519400-42562800	Weak transcription	Fetal Heart	heart
3	chr15:42520200-42561000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:42521000-42551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:42527200-42548200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:42528800-42548800	Weak transcription	Small Intestine	intestine
7	chr15:42529800-42548400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:42530200-42546400	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:42530600-42548800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:42530800-42551600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:42530800-42551600	Weak transcription	Right Ventricle	heart
12	chr15:42531800-42551800	Weak transcription	Psoas Muscle	Psoas
13	chr15:42532000-42551600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:42532200-42551000	Weak transcription	HMEC	breast
15	chr15:42532200-42552800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:42532400-42548200	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:42532400-42548400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:42534800-42548400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:42535200-42546400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:42536600-42546600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:42542400-42547200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:42542800-42547600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:42542800-42550000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:42542800-42561600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:42543400-42546200	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:42543400-42547800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
27	chr15:42543400-42551000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr15:42543400-42559000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:42543400-42561200	Strong transcription	Liver	Liver
30	chr15:42543600-42547600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr15:42543600-42548600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr15:42543600-42552600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:42543600-42561000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:42543800-42546200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:42543800-42546400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:42543800-42546400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
37	chr15:42543800-42547200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:42543800-42547600	Strong transcription	Fetal Lung	lung
39	chr15:42543800-42549600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
40	chr15:42543800-42552800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:42543800-42556600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:42543800-42557000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:42543800-42560200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr15:42543800-42560800	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr15:42543800-42561600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:42544000-42546400	Strong transcription	NHLF	lung
47	chr15:42544000-42560600	Strong transcription	Adipose Nuclei	Adipose
48	chr15:42544000-42560800	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:42544200-42546400	ZNF genes & repeats	Dnd41	blood
50	chr15:42544200-42561000	Strong transcription	Rectal Mucosa Donor 31	rectum

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