Variant report

Variant	rs7518221
Chromosome Location	chr1:225561346-225561347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11578981	0.93[CHB][hapmap];0.82[CHD][hapmap];0.94[YRI][hapmap]
rs12729445	0.93[CHB][hapmap];0.89[YRI][hapmap]
rs12737248	0.93[CHB][hapmap];0.95[YRI][hapmap]
rs12756111	0.93[CHB][hapmap];0.84[CHD][hapmap];0.95[YRI][hapmap]
rs7550037	0.93[CHB][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945672	chr1:225339532-225561349	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7518221	LEFTY1	cis	cerebellum	SCAN
rs7518221	ACBD3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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