Variant report

Variant	rs7520772
Chromosome Location	chr1:212621251-212621252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212617519..212622581-chr1:212622841..212626048,6	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11577176	0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11578276	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058803	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12084711	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12096385	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12568314	0.89[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12568487	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12568488	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs634296	0.80[ASN][1000 genomes]
rs6657001	0.89[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6698327	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs73088527	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs731075	0.84[GIH][hapmap]
rs74138155	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74140013	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520878	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542213	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7553792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	nsv997629	chr1:212404489-212658785	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv535286	chr1:212404489-212658785	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
6	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
7	nsv873156	chr1:212585092-212646225	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv873157	chr1:212610755-212640982	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv873158	chr1:212610755-212646225	Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv873159	chr1:212610755-212669475	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv873160	chr1:212610755-212675482	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv873161	chr1:212610755-212683565	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv873162	chr1:212610755-212716033	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv527863	chr1:212617423-212700618	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv945283	chr1:212621169-212622554	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212607000-212623400	Weak transcription	HSMMtube	muscle
2	chr1:212607400-212622800	Weak transcription	Primary B cells from cord blood	blood
3	chr1:212607400-212625800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:212607400-212626000	Weak transcription	Colonic Mucosa	Colon
5	chr1:212607400-212629200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:212607600-212621800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:212607600-212624000	Weak transcription	Fetal Brain Male	brain
8	chr1:212607600-212625800	Weak transcription	Stomach Mucosa	stomach
9	chr1:212607600-212626000	Weak transcription	NH-A	brain
10	chr1:212607800-212623400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr1:212607800-212624400	Weak transcription	NHEK	skin
12	chr1:212607800-212625800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:212607800-212625800	Weak transcription	NHLF	lung
14	chr1:212607800-212629400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:212608000-212621600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:212608000-212625800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:212608000-212627000	Weak transcription	HepG2	liver
18	chr1:212611000-212622200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:212613400-212621600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:212614200-212626000	Weak transcription	Fetal Kidney	kidney
21	chr1:212614400-212626200	Weak transcription	Pancreas	Pancrea
22	chr1:212614400-212629200	Weak transcription	GM12878-XiMat	blood
23	chr1:212614400-212636800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr1:212614600-212622400	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:212615000-212623400	Weak transcription	Right Atrium	heart
26	chr1:212615000-212623600	Weak transcription	Psoas Muscle	Psoas
27	chr1:212615800-212621400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:212616800-212621400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:212616800-212624000	Strong transcription	Fetal Intestine Small	intestine
30	chr1:212617400-212621600	Strong transcription	Fetal Stomach	stomach
31	chr1:212617600-212621400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:212617600-212621400	Strong transcription	Placenta	Placenta
33	chr1:212618000-212623600	Weak transcription	HSMM	muscle
34	chr1:212618200-212622400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:212618400-212627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:212619000-212621400	Strong transcription	Thymus	Thymus
37	chr1:212619000-212625800	Weak transcription	Fetal Lung	lung
38	chr1:212619400-212625800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:212619400-212627000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr1:212619600-212623000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr1:212619600-212623600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:212619600-212625600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:212619600-212626000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:212619600-212626000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr1:212619600-212626400	Weak transcription	Spleen	Spleen
46	chr1:212619600-212629000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr1:212619600-212629000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr1:212619600-212629000	Weak transcription	K562	blood
49	chr1:212619600-212629200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr1:212619600-212636800	Weak transcription	Placenta Amnion	Placenta Amnion

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