Variant report

Variant	rs7525048
Chromosome Location	chr1:80051910-80051911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:80047758..80050486-chr1:80050910..80053801,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12023367	1.00[AMR][1000 genomes]
rs12025658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027888	1.00[AMR][1000 genomes]
rs12029642	1.00[AMR][1000 genomes]
rs12030013	1.00[AMR][1000 genomes]
rs12030299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034665	1.00[AMR][1000 genomes]
rs12036905	1.00[AMR][1000 genomes]
rs12037641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12039488	1.00[AMR][1000 genomes]
rs12039867	1.00[AMR][1000 genomes]
rs12039923	1.00[AMR][1000 genomes]
rs12040121	1.00[AMR][1000 genomes]
rs12040237	1.00[AMR][1000 genomes]
rs12040880	1.00[AMR][1000 genomes]
rs12041108	1.00[AMR][1000 genomes]
rs12041732	1.00[AMR][1000 genomes]
rs12041849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12042159	1.00[AMR][1000 genomes]
rs12043955	1.00[AMR][1000 genomes]
rs12044515	1.00[AMR][1000 genomes]
rs12044901	1.00[AMR][1000 genomes]
rs12045663	1.00[AMR][1000 genomes]
rs12045991	1.00[AMR][1000 genomes]
rs12047490	1.00[AMR][1000 genomes]
rs12072801	0.86[AFR][1000 genomes]
rs1382972	0.86[AFR][1000 genomes]
rs17098662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17103209	1.00[AMR][1000 genomes]
rs17103224	1.00[AMR][1000 genomes]
rs17103273	1.00[AMR][1000 genomes]
rs17103305	1.00[AMR][1000 genomes]
rs17103450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2132054	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012004	chr1:79945395-80096748	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv535017	chr1:79945395-80096748	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1012296	chr1:79945395-80300216	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005022	chr1:79950774-80106902	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv546636	chr1:79964823-80079996	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv546637	chr1:79984748-80159969	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3393619	chr1:80018980-80054975	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:80051400-80054200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:80051600-80052400	Enhancers	Psoas Muscle	Psoas
3	chr1:80051800-80052400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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