Variant report

Variant	rs7525534
Chromosome Location	chr1:209739903-209739904
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:208825772..208826309-chr1:209739577..209740094,2	K562	blood:
2	chr1:209739097..209740094-chr1:209921398..209921982,2	K562	blood:
3	chr1:209739402..209740077-chr1:209920611..209921381,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12078982	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12408760	0.84[ASN][1000 genomes]
rs2003681	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2015617	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2076218	0.86[EUR][1000 genomes]
rs2076224	0.82[CHB][hapmap]
rs2356933	0.91[CHB][hapmap]
rs35772315	0.86[EUR][1000 genomes]
rs3888724	0.91[EUR][1000 genomes]
rs4436393	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4556360	0.91[CHB][hapmap]
rs56209412	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6540544	0.95[CHB][hapmap]
rs6695896	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs713074	0.91[CHB][hapmap]
rs7512091	0.80[JPT][hapmap]
rs7522730	0.91[CHB][hapmap]
rs7528476	0.91[CHB][hapmap]
rs7533785	0.82[CHB][hapmap]
rs7541174	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs760832	0.87[CHB][hapmap];0.83[CHD][hapmap];0.81[TSI][hapmap];0.85[ASN][1000 genomes]
rs926386	0.91[CHB][hapmap]
rs9430004	0.82[CHB][hapmap]
rs977441	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7525534	SLC30A1	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209734400-209740600	Weak transcription	HSMM	muscle
2	chr1:209738000-209740000	Enhancers	Fetal Intestine Large	intestine
3	chr1:209738200-209740600	Enhancers	HMEC	breast
4	chr1:209738200-209742000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:209738400-209742000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:209738400-209743000	Weak transcription	Fetal Kidney	kidney
7	chr1:209739000-209741800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:209739200-209740000	Enhancers	Fetal Intestine Small	intestine
9	chr1:209739200-209741000	Weak transcription	Esophagus	oesophagus
10	chr1:209739200-209741600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:209739400-209740600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:209739400-209740600	Weak transcription	HSMMtube	muscle
13	chr1:209739600-209740000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
14	chr1:209739600-209740000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr1:209739600-209740000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:209739600-209740000	Flanking Active TSS	NHEK	skin
17	chr1:209739600-209740200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:209739600-209741600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:209739600-209743000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:209739800-209740200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:209739800-209740600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:209739800-209743000	Weak transcription	Brain Substantia Nigra	brain

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