Variant report

Variant	rs7526145
Chromosome Location	chr1:10811767-10811768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10810911..10812812-chr1:10814536..10816677,2	MCF-7	breast:
2	chr1:10576169..10576739-chr1:10810893..10811767,2	MCF-7	breast:
3	chr1:10752290..10752910-chr1:10811240..10811848,2	MCF-7	breast:
4	chr1:10807075..10808739-chr1:10811624..10813204,2	MCF-7	breast:
5	chr1:10811402..10814059-chr1:10819758..10821761,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35046754	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828181	chr1:10673130-10829937	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1014818	chr1:10675978-10846823	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv464838	chr1:10684098-10842021	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv545400	chr1:10684098-10842021	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1006689	chr1:10688713-10822684	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv525693	chr1:10694125-10840905	Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv1002618	chr1:10703941-10822684	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1014705	chr1:10703941-10840824	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv832314	chr1:10704811-10859919	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv465283	chr1:10767902-10815421	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv545405	chr1:10767902-10815421	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10798800-10832000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:10800000-10816400	Weak transcription	Pancreas	Pancrea
3	chr1:10803600-10815400	Weak transcription	Colonic Mucosa	Colon
4	chr1:10803800-10813400	Weak transcription	Small Intestine	intestine
5	chr1:10804200-10815400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:10804600-10815600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:10805000-10811800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:10805600-10813400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:10806200-10813400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:10806400-10815800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:10806800-10815600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:10806800-10815800	Weak transcription	Fetal Intestine Large	intestine
13	chr1:10807000-10815800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:10807200-10811800	Weak transcription	Psoas Muscle	Psoas
15	chr1:10807400-10812000	Weak transcription	Right Atrium	heart
16	chr1:10807400-10815200	Weak transcription	Lung	lung
17	chr1:10807600-10813400	Strong transcription	Fetal Intestine Small	intestine
18	chr1:10809000-10811800	Weak transcription	Fetal Heart	heart
19	chr1:10809000-10813400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:10809200-10815400	Weak transcription	Esophagus	oesophagus
21	chr1:10810200-10819400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr1:10811200-10812800	Enhancers	Colon Smooth Muscle	Colon
23	chr1:10811400-10812600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr1:10811400-10812600	Bivalent Enhancer	Fetal Stomach	stomach
25	chr1:10811400-10814400	Enhancers	Stomach Mucosa	stomach
26	chr1:10811600-10811800	Enhancers	Stomach Smooth Muscle	stomach
27	chr1:10811600-10812000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:10811600-10812000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:10811600-10812600	Genic enhancers	Gastric	stomach
30	chr1:10811600-10812600	Enhancers	Right Ventricle	heart
31	chr1:10811600-10818800	Enhancers	Left Ventricle	heart
32	chr1:10811600-10819400	Enhancers	Skeletal Muscle Female	skeletal muscle

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