Variant report

Variant	rs7526329
Chromosome Location	chr1:224617323-224617324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224607859..224609701-chr1:224614855..224617759,2	MCF-7	breast:
2	chr1:224617091..224617963-chr19:47729258..47729978,2	NB4	blood:
3	chr1:224615588..224618282-chr1:224620830..224623726,7	MCF-7	breast:
4	chr1:224615619..224618582-chr1:224673125..224674786,2	K562	blood:
5	chr1:224543781..224546462-chr1:224616960..224621011,5	K562	blood:
6	chr1:224559312..224561005-chr1:224615588..224617716,2	K562	blood:
7	chr1:224544617..224546435-chr1:224615748..224617645,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162923	Chromatin interaction
ENSG00000143771	Chromatin interaction
ENSG00000143786	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv469889	chr1:224440354-224634374	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv482318	chr1:224440354-224634374	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1013149	chr1:224605943-224646382	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv535312	chr1:224605943-224646382	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7526329	WDR26	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224547400-224618600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:224572000-224617800	Strong transcription	Fetal Thymus	thymus
3	chr1:224572400-224617600	Strong transcription	Placenta	Placenta
4	chr1:224572600-224617600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:224572600-224617600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:224572600-224618400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:224573200-224618400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:224573200-224618400	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:224573600-224618200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:224577000-224617400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:224579600-224617400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr1:224595400-224618000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:224599800-224618000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:224600200-224617400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:224605200-224618400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:224608400-224620800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:224609600-224618400	Weak transcription	Right Atrium	heart
18	chr1:224612000-224617400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:224612000-224618400	Weak transcription	Fetal Heart	heart
20	chr1:224612000-224619400	Weak transcription	Stomach Mucosa	stomach
21	chr1:224612200-224617400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr1:224612200-224619200	Weak transcription	Brain Germinal Matrix	brain
23	chr1:224612400-224618200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:224612400-224618400	Weak transcription	Aorta	Aorta
25	chr1:224612400-224618400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:224612400-224618400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:224612400-224618400	Weak transcription	Fetal Brain Male	brain
28	chr1:224612400-224619200	Weak transcription	Right Ventricle	heart
29	chr1:224612400-224620000	Weak transcription	Ovary	ovary
30	chr1:224612400-224620400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:224612400-224620400	Weak transcription	Esophagus	oesophagus
32	chr1:224612400-224620400	Weak transcription	Pancreas	Pancrea
33	chr1:224612400-224620600	Weak transcription	Spleen	Spleen
34	chr1:224613000-224618000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
35	chr1:224613000-224618400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr1:224613000-224618400	Weak transcription	Colonic Mucosa	Colon
37	chr1:224613000-224618600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:224613000-224620400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr1:224613000-224620400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr1:224613200-224618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr1:224613200-224618400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr1:224613200-224618600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr1:224613400-224617400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr1:224613400-224617400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr1:224613600-224617600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr1:224613600-224617600	Weak transcription	HSMMtube	muscle
47	chr1:224613800-224618000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:224613800-224618600	Weak transcription	Fetal Brain Female	brain
49	chr1:224614000-224618400	Weak transcription	HepG2	liver
50	chr1:224614600-224617400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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