Variant report

Variant	rs7526391
Chromosome Location	chr1:95084281-95084282
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95075515..95077960-chr1:95084097..95086216,2	K562	blood:
2	chr1:95083696..95086099-chr1:95111956..95113779,2	MCF-7	breast:
3	chr1:95005520..95008552-chr1:95083214..95086682,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117525	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10782984	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165185	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1343479	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539151	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1539622	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539623	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111912	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35360343	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3814017	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4351649	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4847317	0.90[ASN][1000 genomes]
rs6661485	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550601	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv947122	chr1:95081067-95089572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv519997	chr1:95083836-95113417	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95065600-95087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:95075200-95088400	Weak transcription	Fetal Lung	lung
3	chr1:95075600-95086000	Weak transcription	Fetal Stomach	stomach
4	chr1:95078600-95085200	Weak transcription	Pancreas	Pancrea
5	chr1:95078600-95086000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:95080800-95085200	Weak transcription	Gastric	stomach
7	chr1:95080800-95085200	Weak transcription	Lung	lung
8	chr1:95080800-95086800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:95081000-95085400	Weak transcription	Stomach Mucosa	stomach
10	chr1:95082400-95084400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:95082400-95086200	Weak transcription	Fetal Heart	heart
12	chr1:95082600-95088200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:95082800-95088200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:95083000-95087600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:95083000-95087800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:95083200-95086400	Weak transcription	A549	lung
17	chr1:95083400-95085200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:95083400-95085800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr1:95083400-95086200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:95083400-95086200	Weak transcription	Small Intestine	intestine
21	chr1:95083400-95087000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:95083400-95088600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:95083600-95084400	ZNF genes & repeats	HMEC	breast
24	chr1:95083600-95084800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:95083600-95085400	Weak transcription	HSMM	muscle
26	chr1:95083800-95085200	Weak transcription	Hela-S3	cervix
27	chr1:95083800-95085200	Weak transcription	NH-A	brain
28	chr1:95083800-95086400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:95083800-95086800	Weak transcription	NHLF	lung
30	chr1:95083800-95087200	Weak transcription	Osteobl	bone
31	chr1:95083800-95088600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr1:95084000-95085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:95084000-95085200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:95084000-95086400	Weak transcription	Colonic Mucosa	Colon
35	chr1:95084000-95086600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:95084000-95086800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:95084000-95086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:95084000-95087000	Weak transcription	HepG2	liver
39	chr1:95084000-95087600	Weak transcription	NHDF-Ad	bronchial
40	chr1:95084000-95088200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr1:95084200-95085000	Weak transcription	NHEK	skin
42	chr1:95084200-95085200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr1:95084200-95085200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:95084200-95085200	Weak transcription	Placenta Amnion	Placenta Amnion

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