Variant report

Variant	rs75264746
Chromosome Location	chr7:65860216-65860217
allele	-/GAGA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr7:65860074-65860577	HUVEC	blood vessel:	n/a	chr7:65860252-65860263
2	POLR2A	chr7:65860175-65860591	SK-N-SH	brain:	n/a	n/a
3	FOS	chr7:65860114-65860530	MCF10A-Er-Src	breast:	n/a	chr7:65860252-65860263
4	E2F4	chr7:65860200-65860374	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr7:65860168-65860511	MCF10A-Er-Src	breast:	n/a	chr7:65860354-65860365
6	POLR2A	chr7:65860123-65860606	HUVEC	blood vessel:	n/a	n/a
7	FOS	chr7:65860087-65860515	MCF10A-Er-Src	breast:	n/a	chr7:65860252-65860263
8	STAT3	chr7:65860184-65860452	MCF10A-Er-Src	breast:	n/a	chr7:65860354-65860365
9	MAFK	chr7:65860173-65860371	IMR90	lung:	n/a	n/a
10	GATA3	chr7:65860162-65860686	SK-N-SH	brain:	n/a	n/a
11	STAT3	chr7:65860135-65860493	MCF10A-Er-Src	breast:	n/a	chr7:65860354-65860365
12	MYC	chr7:65860123-65860452	MCF10A-Er-Src	breast:	n/a	n/a
13	CEBPB	chr7:65860157-65860405	IMR90	lung:	n/a	n/a
14	FOXA2	chr7:65860137-65860463	A549	lung:	n/a	n/a
15	JUN	chr7:65860145-65860476	HUVEC	blood vessel:	n/a	n/a
16	GATA2	chr7:65860155-65860565	HUVEC	blood vessel:	n/a	n/a
17	STAT3	chr7:65860122-65860493	MCF10A-Er-Src	breast:	n/a	chr7:65860354-65860365
18	MYC	chr7:65860135-65860475	MCF10A-Er-Src	breast:	n/a	n/a
19	FOS	chr7:65860067-65860603	MCF10A-Er-Src	breast:	n/a	chr7:65860252-65860263
20	FOS	chr7:65860067-65860493	MCF10A-Er-Src	breast:	n/a	chr7:65860252-65860263

Variant related genes	Relation type
LINC00174	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv970513	chr7:65842694-65860742	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv981506	chr7:65842694-65876873	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv435858	chr7:65856032-65862261	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3443389	chr7:65856648-65860495	Enhancers Strong transcription Weak transcription Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv999969	chr7:65857043-65861310	Weak transcription Enhancers Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3441017	chr7:65857123-65860412	Weak transcription Strong transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv511970	chr7:65857356-65860617	Strong transcription Weak transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3378136	chr7:65857417-65861265	Enhancers Weak transcription Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv3398857	chr7:65857560-65860247	Weak transcription Enhancers Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
15	esv3477315	chr7:65857564-65860265	Weak transcription Enhancers Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65840000-65878400	Weak transcription	Psoas Muscle	Psoas
2	chr7:65840400-65873400	Weak transcription	K562	blood
3	chr7:65841400-65875400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:65842400-65867800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:65843400-65877600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:65843600-65878200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:65844000-65878400	Weak transcription	Thymus	Thymus
8	chr7:65844600-65860400	Weak transcription	Esophagus	oesophagus
9	chr7:65845000-65866800	Weak transcription	Brain Anterior Caudate	brain
10	chr7:65845000-65867200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:65845000-65867200	Weak transcription	Spleen	Spleen
12	chr7:65845000-65873000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:65845000-65873600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr7:65845000-65878000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:65845000-65878000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:65845000-65878200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:65845000-65878200	Weak transcription	Right Ventricle	heart
18	chr7:65845000-65878400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:65845000-65878400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr7:65845000-65878400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:65845200-65867200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:65845200-65873400	Weak transcription	HepG2	liver
23	chr7:65845200-65878200	Weak transcription	Left Ventricle	heart
24	chr7:65845200-65878600	Weak transcription	Aorta	Aorta
25	chr7:65845400-65860400	Weak transcription	Osteobl	bone
26	chr7:65845400-65863400	Weak transcription	Brain Angular Gyrus	brain
27	chr7:65845400-65864200	Weak transcription	Primary T cells from cord blood	blood
28	chr7:65845400-65865600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:65845400-65866600	Weak transcription	Adipose Nuclei	Adipose
30	chr7:65845400-65875400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:65845400-65877200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:65845400-65878000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:65845400-65878200	Weak transcription	Brain Germinal Matrix	brain
34	chr7:65845400-65878200	Weak transcription	Pancreas	Pancrea
35	chr7:65845600-65860400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:65845600-65864000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:65845600-65864000	Weak transcription	Brain Substantia Nigra	brain
38	chr7:65845600-65864000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:65845600-65864200	Weak transcription	Fetal Brain Female	brain
40	chr7:65845600-65864600	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:65845600-65865400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr7:65845600-65866800	Weak transcription	Primary B cells from cord blood	blood
43	chr7:65845600-65867400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr7:65845600-65873400	Weak transcription	Ovary	ovary
45	chr7:65845600-65877400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:65845600-65878200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:65845600-65878200	Weak transcription	Fetal Thymus	thymus
48	chr7:65845600-65878400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:65845600-65878600	Weak transcription	Gastric	stomach
50	chr7:65846200-65860400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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