Variant report

Variant	rs75267544
Chromosome Location	chr1:226346774-226346775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226346362..226348286-chr1:226349538..226352001,2	MCF-7	breast:
2	chr1:226346683..226348956-chr1:226386366..226388887,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832747	chr1:226194143-226373415	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv873232	chr1:226242772-226375267	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv832759	chr1:226303760-226504170	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv819122	chr1:226346557-226350396	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226323800-226355000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:226324000-226372800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:226329600-226353800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:226330600-226354200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:226330800-226354200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:226331000-226353800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:226331000-226353800	Strong transcription	Adipose Nuclei	Adipose
8	chr1:226331000-226354000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:226331000-226355200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:226331600-226353600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:226331600-226353800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr1:226331600-226354200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:226331600-226355600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr1:226331800-226353800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:226331800-226353800	Strong transcription	Liver	Liver
16	chr1:226333000-226356400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:226333800-226354400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:226337800-226352600	Strong transcription	A549	lung
19	chr1:226338000-226350800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr1:226338200-226354000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:226338400-226348400	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:226338400-226351000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr1:226338400-226353800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:226338400-226353800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:226338400-226354200	Strong transcription	Placenta	Placenta
26	chr1:226338400-226354400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr1:226338600-226353600	Strong transcription	Stomach Smooth Muscle	stomach
28	chr1:226340200-226353200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr1:226340400-226349200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:226340400-226369600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:226341400-226346800	Weak transcription	Small Intestine	intestine
32	chr1:226341600-226348600	Weak transcription	Stomach Mucosa	stomach
33	chr1:226341600-226348800	Genic enhancers	Primary B cells from peripheral blood	blood
34	chr1:226343000-226348400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:226343400-226353800	Strong transcription	Osteobl	bone
36	chr1:226343600-226347600	Strong transcription	HUVEC	blood vessel
37	chr1:226343600-226353600	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr1:226343600-226353800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr1:226343600-226353800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:226343600-226354200	Strong transcription	HepG2	liver
41	chr1:226343600-226354400	Strong transcription	Dnd41	blood
42	chr1:226343600-226354800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:226343600-226354800	Strong transcription	Primary T cells from cord blood	blood
44	chr1:226343800-226349200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr1:226343800-226350400	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr1:226343800-226353800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr1:226343800-226354000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr1:226344000-226352400	Strong transcription	HMEC	breast
49	chr1:226344000-226352800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:226344000-226353800	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links