Variant report

Variant	rs7526772
Chromosome Location	chr1:175101226-175101227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174991644..174994084-chr1:175099649..175102143,2	K562	blood:
2	chr1:175101221..175103304-chr1:175107956..175109650,3	K562	blood:

Variant related genes	Relation type
ENSG00000120333	Chromatin interaction
ENSG00000206659	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10798335	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912891	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912892	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912893	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2213875	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670979	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704290	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7529212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175095800-175102600	Enhancers	Stomach Smooth Muscle	stomach
2	chr1:175096400-175102600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:175097200-175103000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:175097800-175103400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:175098400-175101600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:175098400-175102000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:175098400-175102000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:175098400-175102000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:175098600-175101600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:175098800-175101400	Weak transcription	HMEC	breast
11	chr1:175099200-175101600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:175099200-175102800	Weak transcription	Stomach Mucosa	stomach
13	chr1:175099200-175103200	Enhancers	Rectal Smooth Muscle	rectum
14	chr1:175099400-175101600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:175099400-175101600	Weak transcription	Ovary	ovary
16	chr1:175099400-175103000	Weak transcription	Spleen	Spleen
17	chr1:175099800-175101600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:175099800-175101800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr1:175099800-175101800	Weak transcription	Placenta	Placenta
20	chr1:175099800-175103000	Weak transcription	Lung	lung
21	chr1:175100000-175101800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr1:175100000-175101800	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:175100000-175105400	Weak transcription	Liver	Liver
24	chr1:175100000-175105800	Weak transcription	Adipose Nuclei	Adipose
25	chr1:175100200-175103200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:175100400-175101600	Weak transcription	Fetal Stomach	stomach
27	chr1:175100400-175101800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:175100400-175101800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:175100400-175103000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:175100400-175105200	Enhancers	GM12878-XiMat	blood
31	chr1:175101000-175101400	Enhancers	Small Intestine	intestine
32	chr1:175101000-175101800	Enhancers	NHLF	lung
33	chr1:175101000-175102000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:175101000-175102400	Enhancers	HSMM	muscle
35	chr1:175101000-175102800	Enhancers	Fetal Lung	lung
36	chr1:175101200-175101400	Enhancers	H1 Cell Line	embryonic stem cell
37	chr1:175101200-175101400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:175101200-175101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:175101200-175101600	Weak transcription	Right Ventricle	heart
40	chr1:175101200-175101800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr1:175101200-175102000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr1:175101200-175102000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:175101200-175102000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:175101200-175102000	Enhancers	Left Ventricle	heart
45	chr1:175101200-175102000	Enhancers	Right Atrium	heart
46	chr1:175101200-175102000	Enhancers	NH-A	brain
47	chr1:175101200-175102000	Enhancers	NHEK	skin
48	chr1:175101200-175102200	Enhancers	Osteobl	bone
49	chr1:175101200-175102400	Enhancers	HSMMtube	muscle
50	chr1:175101200-175103000	Enhancers	NHDF-Ad	bronchial

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