Variant report

Variant	rs7527013
Chromosome Location	chr1:223662541-223662542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10495209	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12046541	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4295879	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344324	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4623692	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623693	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4661271	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4661273	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61823509	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6671885	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6682926	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6685694	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6690293	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1013538	chr1:223626487-223670776	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7527013	BPNT1	cis	parietal	SCAN
rs7527013	WDR26	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223661400-223671600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:223661400-223674000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:223661800-223665400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:223662000-223662800	Weak transcription	Lung	lung
5	chr1:223662000-223665400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:223662000-223665600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:223662200-223662800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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