Variant report

Variant	rs75284103
Chromosome Location	chr18:44663578-44663579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44660900..44663835-chr18:44675479..44677959,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KATNAL2-6	chr18:44663389-44663661	NONHSAT059155

Variant related genes	Relation type
ENSG00000167220	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv833640	chr18:44552276-44714872	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv909612	chr18:44560875-44681485	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv576819	chr18:44602249-44677627	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv909613	chr18:44644530-44690107	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv960277	chr18:44662930-44664886	Strong transcription Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44620800-44675400	Weak transcription	A549	lung
2	chr18:44621600-44674400	Weak transcription	Small Intestine	intestine
3	chr18:44626600-44664800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:44629200-44675800	Weak transcription	HUVEC	blood vessel
5	chr18:44632400-44675800	Weak transcription	Stomach Mucosa	stomach
6	chr18:44636200-44670600	Weak transcription	Pancreas	Pancrea
7	chr18:44639600-44665000	Weak transcription	Colonic Mucosa	Colon
8	chr18:44639600-44666400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr18:44640600-44675600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr18:44641600-44670400	Weak transcription	HepG2	liver
11	chr18:44641600-44674000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr18:44641600-44675800	Weak transcription	Lung	lung
13	chr18:44641800-44664400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr18:44641800-44665600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr18:44641800-44674400	Weak transcription	Aorta	Aorta
16	chr18:44641800-44675200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr18:44641800-44675400	Weak transcription	Fetal Intestine Small	intestine
18	chr18:44641800-44675800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr18:44641800-44675800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr18:44642000-44664600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr18:44642000-44675200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr18:44642200-44674600	Weak transcription	NHEK	skin
23	chr18:44645600-44665200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr18:44645600-44667600	Weak transcription	HSMMtube	muscle
25	chr18:44647800-44675800	Weak transcription	Ovary	ovary
26	chr18:44649400-44664000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr18:44650400-44670800	Weak transcription	Right Ventricle	heart
28	chr18:44653400-44668600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:44655200-44663600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr18:44655800-44670000	Weak transcription	Fetal Heart	heart
31	chr18:44656400-44675200	Weak transcription	Thymus	Thymus
32	chr18:44656800-44670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr18:44656800-44675000	Weak transcription	Colon Smooth Muscle	Colon
34	chr18:44656800-44675200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr18:44659800-44664000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr18:44660200-44664000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:44660200-44667200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr18:44660400-44663600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr18:44660400-44663600	Strong transcription	Duodenum Mucosa	Duodenum
40	chr18:44660400-44663600	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr18:44660400-44663600	Strong transcription	HSMM	muscle
42	chr18:44660400-44663600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr18:44660400-44663800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr18:44660400-44663800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr18:44660400-44663800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr18:44660400-44663800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr18:44660400-44664000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr18:44660400-44664200	Strong transcription	Primary B cells from cord blood	blood
49	chr18:44660600-44663600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr18:44660600-44663600	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links