Variant report

Variant	rs7528601
Chromosome Location	chr1:151560682-151560683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151558823..151561382-chr1:151583549..151586141,3	MCF-7	breast:
2	1:151516085-151535167..1:151560153-151561807	Hela-S3	cervix:
3	chr1:151518375..151521328-chr1:151559247..151561666,2	MCF-7	breast:
4	chr1:151559403..151561467-chr1:151568084..151570388,2	MCF-7	breast:
5	1:151411623-151426875..1:151560153-151561807	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000143442	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000143376	Chromatin interaction
ENSG00000223861	Chromatin interaction
ENSG00000250734	Chromatin interaction
ENSG00000207606	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10888424	0.93[EUR][1000 genomes]
rs12749	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970568	0.91[EUR][1000 genomes]
rs6587606	0.91[EUR][1000 genomes]
rs6698868	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997511	chr1:151491765-151595902	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151533800-151561600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:151535800-151561800	Weak transcription	Brain Substantia Nigra	brain
3	chr1:151554800-151566200	Weak transcription	Ovary	ovary
4	chr1:151555000-151568800	Weak transcription	Liver	Liver
5	chr1:151555400-151580800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:151555600-151566600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:151556400-151569200	Weak transcription	Pancreas	Pancrea
8	chr1:151556600-151566600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:151557000-151566400	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:151557200-151560800	Weak transcription	Brain Germinal Matrix	brain
11	chr1:151557800-151561800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:151558200-151566600	Weak transcription	Fetal Stomach	stomach
13	chr1:151558600-151566600	Weak transcription	Fetal Kidney	kidney
14	chr1:151558800-151563400	Weak transcription	K562	blood
15	chr1:151559600-151561200	Weak transcription	HSMM	muscle
16	chr1:151559600-151568800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:151560000-151564600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:151560000-151566200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:151560000-151568400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:151560600-151561000	Weak transcription	HepG2	liver

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