Variant report

Variant	rs752861
Chromosome Location	chr6:15273252-15273253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15265867..15267617-chr6:15272085..15274902,2	MCF-7	breast:
2	chr6:15266698..15269191-chr6:15273161..15275404,3	K562	blood:
3	chr6:15272773..15275476-chr6:15276745..15279472,5	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10949286	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10949287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10949289	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10949290	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12196030	0.88[CEU][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs6459403	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs72834541	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7453429	0.90[MEX][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15261200-15275000	Weak transcription	HMEC	breast
4	chr6:15265400-15279000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:15265800-15274800	Weak transcription	NHEK	skin
6	chr6:15266000-15275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:15266200-15279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:15267200-15279600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:15267400-15275000	Weak transcription	Osteobl	bone
10	chr6:15268000-15279800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:15268400-15274800	Weak transcription	Liver	Liver
12	chr6:15269200-15275200	Weak transcription	HSMM	muscle
13	chr6:15269200-15290000	Weak transcription	NHLF	lung
14	chr6:15269400-15274200	Weak transcription	Psoas Muscle	Psoas
15	chr6:15269400-15274800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:15269400-15274800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:15269400-15274800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:15269400-15275200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:15269400-15276800	Weak transcription	NH-A	brain
20	chr6:15269600-15273400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:15269600-15274800	Weak transcription	Adipose Nuclei	Adipose
22	chr6:15269600-15275000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:15269600-15275000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:15269600-15275000	Weak transcription	Right Ventricle	heart
25	chr6:15269600-15275200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:15269600-15275200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:15269600-15275800	Weak transcription	Fetal Brain Female	brain
28	chr6:15269600-15276800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:15269600-15276800	Weak transcription	Pancreas	Pancrea
30	chr6:15269800-15273400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:15269800-15274400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:15269800-15274400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:15269800-15274600	Weak transcription	Fetal Lung	lung
34	chr6:15269800-15275000	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:15269800-15275200	Weak transcription	Fetal Intestine Small	intestine
36	chr6:15269800-15275200	Weak transcription	Left Ventricle	heart
37	chr6:15269800-15280000	Weak transcription	NHDF-Ad	bronchial
38	chr6:15270000-15274400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:15270000-15274800	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:15270000-15274800	Weak transcription	Fetal Stomach	stomach
41	chr6:15270000-15275200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:15270000-15280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:15270000-15281000	Weak transcription	Spleen	Spleen
44	chr6:15270000-15285400	Weak transcription	Thymus	Thymus
45	chr6:15270200-15274600	Weak transcription	Primary B cells from cord blood	blood
46	chr6:15270200-15274600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:15270200-15275200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:15270200-15275200	Weak transcription	Fetal Heart	heart
49	chr6:15270200-15275200	Weak transcription	Fetal Kidney	kidney
50	chr6:15270200-15276000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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