Variant report

Variant	rs7528900
Chromosome Location	chr1:46780381-46780382
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:46772282..46776488-chr1:46779962..46782393,4	MCF-7	breast:
2	chr1:46767252..46770646-chr1:46775895..46782453,8	MCF-7	breast:
3	chr1:46742647..46744307-chr1:46779144..46781501,2	K562	blood:

Variant related genes	Relation type
ENSG00000132128	Chromatin interaction
ENSG00000173660	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2234272	1.00[AMR][1000 genomes]
rs28363216	1.00[AFR][1000 genomes]
rs7544066	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005189	chr1:46335186-46949309	Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv534946	chr1:46335186-46949309	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	esv2761743	chr1:46339858-47026743	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv470711	chr1:46660295-46810530	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv829748	chr1:46724508-46876122	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv947254	chr1:46769363-46808918	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46770600-46781000	Strong transcription	Fetal Intestine Small	intestine
2	chr1:46770600-46783600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:46770800-46787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:46771200-46783600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr1:46771400-46783600	Strong transcription	Fetal Muscle Leg	muscle
6	chr1:46771800-46785000	Weak transcription	Fetal Brain Male	brain
7	chr1:46772200-46783400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:46772200-46783400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:46772400-46783600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:46772600-46784200	Strong transcription	Fetal Intestine Large	intestine
11	chr1:46772800-46780800	Strong transcription	Lung	lung
12	chr1:46772800-46783600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:46773000-46783800	Strong transcription	Left Ventricle	heart
14	chr1:46773400-46782800	Strong transcription	Dnd41	blood
15	chr1:46773400-46783400	Strong transcription	Fetal Thymus	thymus
16	chr1:46773400-46805400	Weak transcription	Right Atrium	heart
17	chr1:46773600-46780800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:46773600-46783400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:46773600-46783800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr1:46773600-46783800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:46773600-46784800	Weak transcription	Stomach Mucosa	stomach
22	chr1:46773800-46783600	Strong transcription	Primary T cells from cord blood	blood
23	chr1:46773800-46783600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:46773800-46785600	Strong transcription	Fetal Stomach	stomach
25	chr1:46774000-46781000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:46774000-46783600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:46774000-46783600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr1:46774000-46783600	Strong transcription	Brain Germinal Matrix	brain
29	chr1:46774000-46783800	Strong transcription	Liver	Liver
30	chr1:46774200-46783600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr1:46774200-46783600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:46774200-46783600	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr1:46774400-46783400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr1:46774400-46783600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:46774400-46783600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr1:46774400-46783600	Strong transcription	Fetal Brain Female	brain
37	chr1:46774400-46784600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr1:46774600-46783400	Strong transcription	Brain Anterior Caudate	brain
39	chr1:46774600-46783600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr1:46774600-46783600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:46774600-46783600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:46774600-46784000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr1:46774800-46780600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:46774800-46780800	Strong transcription	Pancreas	Pancrea
45	chr1:46774800-46781000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:46774800-46782000	Strong transcription	Fetal Lung	lung
47	chr1:46774800-46783400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:46774800-46783400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr1:46774800-46783600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr1:46774800-46783600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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