Variant report

Variant	rs7529206
Chromosome Location	chr1:221390294-221390295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11804340	0.90[AFR][1000 genomes]
rs11809815	0.83[AFR][1000 genomes]
rs11810981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668045	1.00[AMR][1000 genomes]
rs6686234	0.83[AFR][1000 genomes]
rs7521354	1.00[AMR][1000 genomes]
rs7522941	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550164	1.00[AMR][1000 genomes]
rs9970451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221389400-221390400	Enhancers	Primary B cells from cord blood	blood
2	chr1:221389800-221390600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:221389800-221391200	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:221390000-221391600	Enhancers	HUVEC	blood vessel
5	chr1:221390200-221390400	Enhancers	Psoas Muscle	Psoas
6	chr1:221390200-221391000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:221390200-221391000	Enhancers	NHLF	lung
8	chr1:221390200-221391600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:221390200-221391800	Enhancers	Fetal Muscle Leg	muscle
10	chr1:221390200-221392000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:221390200-221392000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:221390200-221392400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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