Variant report

Variant	rs7529494
Chromosome Location	chr1:78662741-78662742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11799753	0.80[ASN][1000 genomes]
rs11804237	0.86[ASN][1000 genomes]
rs11806671	1.00[ASN][1000 genomes]
rs11807462	0.80[ASN][1000 genomes]
rs11807476	0.80[ASN][1000 genomes]
rs11808942	0.80[ASN][1000 genomes]
rs11809101	0.80[ASN][1000 genomes]
rs12410030	0.80[ASN][1000 genomes]
rs12734182	0.86[ASN][1000 genomes]
rs1335482	0.86[ASN][1000 genomes]
rs1407749	0.80[ASN][1000 genomes]
rs17101469	0.80[ASN][1000 genomes]
rs17101472	0.80[ASN][1000 genomes]
rs17101475	0.80[ASN][1000 genomes]
rs2208968	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34040409	0.86[ASN][1000 genomes]
rs34651709	0.86[ASN][1000 genomes]
rs35524314	0.93[ASN][1000 genomes]
rs3811442	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4650471	0.80[ASN][1000 genomes]
rs4650481	0.80[ASN][1000 genomes]
rs530042	0.80[ASN][1000 genomes]
rs55672379	0.80[ASN][1000 genomes]
rs6682319	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs699010	0.80[ASN][1000 genomes]
rs71641331	0.86[ASN][1000 genomes]
rs72687184	0.80[ASN][1000 genomes]
rs72687185	0.80[ASN][1000 genomes]
rs72687187	0.80[ASN][1000 genomes]
rs72687190	0.80[ASN][1000 genomes]
rs72687200	0.80[ASN][1000 genomes]
rs72688718	0.93[ASN][1000 genomes]
rs7516182	0.80[ASN][1000 genomes]
rs7532039	0.80[ASN][1000 genomes]
rs7532135	0.80[ASN][1000 genomes]
rs7537442	0.80[ASN][1000 genomes]
rs7537720	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547287	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554427	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942099	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1000388	chr1:78638946-78665285	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv546600	chr1:78649862-78666990	Active TSS Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78656600-78668800	Weak transcription	Liver	Liver
2	chr1:78657600-78667200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:78657600-78669600	Weak transcription	Pancreas	Pancrea
4	chr1:78659400-78668000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:78662600-78663800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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