Variant report

Variant	rs7529770
Chromosome Location	chr1:211108733-211108734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1393030	0.82[EUR][1000 genomes]
rs1501559	0.85[GIH][hapmap]
rs1604370	0.89[ASW][hapmap];0.82[CEU][hapmap];0.93[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs2102128	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61848993	0.83[EUR][1000 genomes]
rs6540647	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7529770	KCNH1	cis	cerebellum	SCAN
rs7529770	IKBKE	cis	cerebellum	SCAN
rs7529770	C1orf74	cis	parietal	SCAN
rs7529770	VASH2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211093400-211110800	Weak transcription	HSMM	muscle
2	chr1:211108600-211117400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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