Variant report

Variant	rs7529900
Chromosome Location	chr1:211442661-211442662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211429837..211436760-chr1:211437638..211443752,13	K562	blood:
2	chr1:210544824..210547229-chr1:211442080..211443872,2	MCF-7	breast:
3	chr1:211440590..211444196-chr1:211446401..211448138,3	K562	blood:
4	chr1:211440836..211443835-chr1:211454975..211456528,2	K562	blood:
5	chr1:211442539..211444623-chr1:211446547..211448204,3	K562	blood:
6	chr1:211431026..211434345-chr1:211441631..211445363,6	MCF-7	breast:
7	chr1:211440625..211442736-chr1:211462830..211465016,2	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11578681	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11586974	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017361	0.96[ASN][1000 genomes]
rs34552796	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36104032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3767380	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61850987	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7538812	0.93[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211443200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:211434400-211444800	Weak transcription	Lung	lung
3	chr1:211434400-211453200	Weak transcription	Small Intestine	intestine
4	chr1:211434400-211453400	Weak transcription	Spleen	Spleen
5	chr1:211434400-211454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:211434400-211487000	Weak transcription	Gastric	stomach
7	chr1:211434600-211443200	Weak transcription	Ovary	ovary
8	chr1:211434600-211444800	Weak transcription	Esophagus	oesophagus
9	chr1:211434600-211449200	Weak transcription	Colonic Mucosa	Colon
10	chr1:211434600-211453400	Weak transcription	Aorta	Aorta
11	chr1:211434600-211454000	Weak transcription	Pancreas	Pancrea
12	chr1:211434600-211462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:211434600-211478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:211434800-211444600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:211434800-211444800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:211434800-211444800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:211434800-211444800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:211434800-211444800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:211434800-211444800	Weak transcription	Psoas Muscle	Psoas
20	chr1:211434800-211444800	Weak transcription	HUVEC	blood vessel
21	chr1:211434800-211445000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:211434800-211445000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:211434800-211445000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:211434800-211445000	Weak transcription	Left Ventricle	heart
25	chr1:211434800-211453000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:211434800-211453400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr1:211434800-211462600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:211434800-211464800	Weak transcription	Right Ventricle	heart
29	chr1:211434800-211474200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:211435000-211443200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:211435000-211443800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:211435000-211444400	Weak transcription	Primary T cells from cord blood	blood
33	chr1:211435000-211444400	Weak transcription	Brain Substantia Nigra	brain
34	chr1:211435000-211444400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr1:211435000-211444600	Weak transcription	Brain Anterior Caudate	brain
36	chr1:211435000-211444600	Weak transcription	Brain Germinal Matrix	brain
37	chr1:211435000-211444600	Weak transcription	HepG2	liver
38	chr1:211435000-211444600	Weak transcription	NH-A	brain
39	chr1:211435000-211444800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:211435000-211444800	Weak transcription	Fetal Brain Male	brain
41	chr1:211435000-211444800	Weak transcription	Fetal Brain Female	brain
42	chr1:211435000-211444800	Weak transcription	Fetal Heart	heart
43	chr1:211435000-211444800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr1:211435000-211444800	Weak transcription	Thymus	Thymus
45	chr1:211435000-211444800	Weak transcription	HSMMtube	muscle
46	chr1:211435000-211445000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr1:211435000-211445000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr1:211435000-211445000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr1:211435000-211445200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr1:211435000-211446600	Weak transcription	Stomach Mucosa	stomach

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