Variant report

Variant	rs7529927
Chromosome Location	chr1:62702333-62702334
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3861935	1.00[AFR][1000 genomes]
rs6657061	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004446	chr1:62394631-62813533	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv534984	chr1:62394631-62813533	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1009398	chr1:62656660-62780644	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62695800-62703400	Weak transcription	Adipose Nuclei	Adipose
2	chr1:62696600-62703600	Weak transcription	Fetal Stomach	stomach
3	chr1:62697000-62702800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:62697000-62703600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:62697000-62706600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:62697200-62702800	Weak transcription	A549	lung
7	chr1:62697400-62702400	Weak transcription	NH-A	brain
8	chr1:62697400-62703200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:62698200-62704000	Enhancers	NHEK	skin
10	chr1:62698600-62704400	Enhancers	Hela-S3	cervix
11	chr1:62699000-62702800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:62699000-62706600	Weak transcription	Fetal Lung	lung
13	chr1:62699000-62706800	Weak transcription	Pancreas	Pancrea
14	chr1:62699200-62703600	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:62699800-62704200	Enhancers	HMEC	breast
16	chr1:62700000-62702400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:62700000-62702800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:62700000-62704000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:62700200-62703400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:62700400-62704000	Enhancers	HSMM	muscle
21	chr1:62700600-62703400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:62700800-62703400	Weak transcription	Placenta	Placenta
23	chr1:62700800-62703800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:62701000-62702800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr1:62701000-62703000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:62701000-62703400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr1:62701000-62703400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:62701000-62703600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:62701000-62707400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr1:62701000-62710800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:62701400-62709400	Weak transcription	Fetal Intestine Small	intestine
32	chr1:62701600-62704200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr1:62701600-62704200	Enhancers	HSMMtube	muscle
34	chr1:62701600-62705000	Enhancers	HepG2	liver
35	chr1:62701800-62702800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:62702000-62704000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:62702000-62704200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr1:62702200-62703200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr1:62702200-62703200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr1:62702200-62703400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:62702200-62706800	Weak transcription	Liver	Liver

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